Merge pull request #370 from lilab-bcb/bug-fix

Handle 'frp' data type in generate_bcl_csv task
lilab-bcb · Nov 17, 2022 · 3c87565 · 3c87565
2 parents 7c58b31 + ecdd60d
commit 3c87565
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/cellranger/cellranger_workflow.wdl b/workflows/cellranger/cellranger_workflow.wdl
@@ -594,7 +594,7 @@ task generate_bcl_csv {
                 sys.exit(1)
             if ('Link' in row) and pd.notnull(row['Link']) and (row['Link'] != ''):
                 multiomics[row['Link']].add(row['DataType'])
-            if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr']:
+            if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr', 'frp']:
                 row['DataType'] = 'rna'
             if re.search('[^a-zA-Z0-9_-]', row['Sample']) is not None:
                 print('Sample must contain only alphanumeric characters, hyphens, and underscores.', file = sys.stderr)