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@libscran

libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 46 15

  2. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 10 2

  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 9

  4. scranpy scranpy Public

    Single-cell data analysis, from C++ to Python

    Python 8

  5. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  6. scrapper scrapper Public

    R bindings to C++ code for single-cell analysis

    R 5

Repositories

Showing 10 of 25 repositories
  • scran_variances Public

    Model per-gene variances in log-expression data

    libscran/scran_variances’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 13, 2025
  • scran_aggregate Public

    Aggregate expression values across groups of cells

    libscran/scran_aggregate’s past year of commit activity
    C++ 1 MIT 0 1 0 Updated Jan 13, 2025
  • scran_markers Public

    Marker detection from single-cell expression data

    libscran/scran_markers’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 11, 2025
  • scran_qc Public

    Compute simple quality control metrics for each cell

    libscran/scran_qc’s past year of commit activity
    C++ 0 MIT 0 1 0 Updated Jan 10, 2025
  • scran_tests Public

    Test utilities for libscran

    libscran/scran_tests’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 9, 2025
  • scranpy Public

    Single-cell data analysis, from C++ to Python

    libscran/scranpy’s past year of commit activity
    Python 8 MIT 0 4 1 Updated Jan 8, 2025
  • .github Public

    Organization profile

    libscran/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Jan 7, 2025
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    libscran/scrapper’s past year of commit activity
    R 5 0 0 0 Updated Jan 6, 2025
  • scran_pca Public

    Various flavors of principal components analysis

    libscran/scran_pca’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 3, 2025
  • clrm1 Public

    A slightly improved method for ADT normalization

    libscran/clrm1’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 31, 2024
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