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.idea
.idea
 
 
ANALYSIS
ANALYSIS
 
 
Docs
Docs
 
 
FIGS
FIGS
 
 
OUT
OUT
 
 
Params
Params
 
 
SupplementFigures
SupplementFigures
 
 
CYCLIN_P.png
CYCLIN_P.png
 
 
Diablo_final.csv
Diablo_final.csv
 
 
Diablo_final_memory_check.csv
Diablo_final_memory_check.csv
 
 
General_info.docx
General_info.docx
 
 
M.png
M.png
 
 
README.md
README.md
 
 
Runall.sh
Runall.sh
 
 
Y2.png
Y2.png
 
 
Y3.png
Y3.png
 
 
Y4.png
Y4.png
 
 
Y5.png
Y5.png
 
 
YT.png
YT.png
 
 
all-GPU_timing.csv
all-GPU_timing.csv
 
 
boxplot_protein.png
boxplot_protein.png
 
 
changed_time_of_death.eps
changed_time_of_death.eps
 
 
changed_time_of_death.png
changed_time_of_death.png
 
 
compare_cupSODA_scipy_lsoda.py
compare_cupSODA_scipy_lsoda.py
 
 
concentration_sampling_earm.py
concentration_sampling_earm.py
 
 
cparp.png
cparp.png
 
 
cupsoda_timings_all.csv
cupsoda_timings_all.csv
 
 
diablo-GPU_timing.csv
diablo-GPU_timing.csv
 
 
diablo_cpu.csv
diablo_cpu.csv
 
 
lolab.csv
lolab.csv
 
 
mule-GPU_timing.csv
mule-GPU_timing.csv
 
 
obs_cAMP.eps
obs_cAMP.eps
 
 
obs_cAMP.png
obs_cAMP.png
 
 
parameters_486_gpu_new_image_matrix.csv
parameters_486_gpu_new_image_matrix.csv
 
 
parameters_486_image_matrix.csv
parameters_486_image_matrix.csv
 
 
parameters_911_gpu_new_image_matrix.csv
parameters_911_gpu_new_image_matrix.csv
 
 
parameters_911_image_matrix.csv
parameters_911_image_matrix.csv
 
 
parse_cupsoda_log.py
parse_cupsoda_log.py
 
 
puma-GPU_timing.csv
puma-GPU_timing.csv
 
 
ras_amp_pka.py
ras_amp_pka.py
 
 
ras_amp_pka.pyc
ras_amp_pka.pyc
 
 
ras_ras_sens__image_matrix.csv
ras_ras_sens__image_matrix.csv
 
 
scipy_multiprocessing_timing_all.csv
scipy_multiprocessing_timing_all.csv
 
 
scipy_times_new.csv
scipy_times_new.csv
 
 
scipy_timings_all.csv
scipy_timings_all.csv
 
 
sens_boxplot_tyson.png
sens_boxplot_tyson.png
 
 
sens_image_matrix_tyson.png
sens_image_matrix_tyson.png
 
 
sens_ras_matrix.csv
sens_ras_matrix.csv
 
 
sens_tyson_matrix.csv
sens_tyson_matrix.csv
 
 
sensitivity_of_models.py
sensitivity_of_models.py
 
 
simply_plot.py
simply_plot.py
 
 
slope.png
slope.png
 
 
smac.png
smac.png
 
 
spreadsheet_timing_scipy_vs_cupSODA.xlsx
spreadsheet_timing_scipy_vs_cupSODA.xlsx
 
 
tbid.png
tbid.png
 
 
test.png
test.png
 
 
updated_diablo.csv
updated_diablo.csv
 
 

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cupSODA-tests

cupSODA/PySB integration tests

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cupSODA/PySB integration tests

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