BPNet

Welcome to the wiki for BPNet! Here you'll find information on how to install, prepare data, train, and evaluate the model. Detailed instructions are provided for each step. This is the improved version of the repo associated the BPNet paper. We suggest using this going forward instead of the original repo.

Please find an overview of the pages in the box to the right -->

The current repo in addition to streamlining and simplifying the command line interface, also has modified a BPNet architecture that better corrects for the Input DNA bias (WCE) and also support training on the GC matched negative regions. These changes provide significant improvements to the model performance.