change release to v1.2

test release binaries in build-release.sh
overwrite existing example_inputs when extracting

Dockerfile

@@ -31,7 +31,7 @@ RUN apt-get update && \
 RUN Rscript -e 'install.packages(c("tidyverse", "umap", "ggrastr", "pins", "rmarkdown"))'
 
 WORKDIR /app
-COPY --from=build /app/librarian_v1.1 ./
+COPY --from=build /app/librarian_v1.2 ./
 RUN mkdir /app/out
 
 LABEL org.opencontainers.image.source https://github.com/DesmondWillowbrook/Librarian

build-dockerfile.sh

@@ -5,7 +5,7 @@ sudo hwclock --hctosys # to sync time between host and WSL2
 podman build -t ghcr.io/desmondwillowbrook/librarian .
 
 cd frontend/example_inputs/
-unzip example_inputs.zip
+unzip -o example_inputs.zip
 cd -
 
 # try running the container

build-release.sh

@@ -14,5 +14,23 @@ mkdir -p $RELEASE_PATH
 # z tells it to use gzip
 # f tells it the archive to save to
 # -C changes directory, affects subsequent directory changes as well
-tar --transform 's,^,librarian_v1.1/,' -czf $RELEASE_PATH/librarian.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release librarian 
-tar --transform 's,^,librarian_v1.1/,' -czf $RELEASE_PATH/server.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release server
+tar --transform 's,^,librarian_v1.2/,' -czf $RELEASE_PATH/librarian.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release librarian 
+tar --transform 's,^,librarian_v1.2/,' -czf $RELEASE_PATH/server.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release server
+
+cd frontend/example_inputs/
+unzip -o example_inputs.zip
+cd -
+
+cd $RELEASE_PATH
+tar -xf librarian.tar 
+./librarian_v1.2/librarian ../frontend/example_inputs/example_inputs/ATAC.example.fastq --local --raw --output-dir=.
+
+# check whether the files are non-empty
+test -s librarian_heatmap.txt
+
+# check whether the files are recent
+test `find librarian_heatmap.txt -mmin -1`
+
+rm librarian_heatmap.txt
+
+cd -