test [wheel]

.github/workflows/nightly.yml

@@ -37,6 +37,37 @@ jobs:
     needs: check-for-new-commits
     if : ${{ needs.check-for-new-commits.outputs.NEW_COMMITS == 'true' }}
     uses: kaizhang/SnapATAC2/.github/workflows/wheels.yml@main
-    with:
-      wheel: 'true'
-      nightly: 'true'
+
+  publish:
+    needs: build-wheel
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+    if: ${{ startsWith(github.ref, 'refs/tags') }}
+    steps:
+    - name: Download wheel files from artifacts
+      id: download-artifact
+      uses: dawidd6/action-download-artifact@v2
+      with:
+        workflow: wheels.yml
+        commit: ${{ github.event.workflow_run.head_sha }}
+        name: dist
+        path: dist
+
+    - name: Delete Release
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: |
+        if gh release view nightly > /dev/null 2>&1; then
+          gh release delete nightly -y --cleanup-tag
+        fi
+
+    - name: Create nightly release
+      uses: ncipollo/release-action@v1
+      with:
+        allowUpdates: true
+        tag: nightly
+        name: Nightly Release
+        prerelease: true
+        removeArtifacts: true
+        artifacts: "dist/*.whl,dist/*.tar.gz"

.github/workflows/test_python.yml

@@ -53,20 +53,38 @@ jobs:
         path: ./wheel_files/snapatac2*.whl
 
   build-wheel:
+    needs: build-and-test
     if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[wheel]') }}
     uses: kaizhang/SnapATAC2/.github/workflows/wheels.yml@main
-    with:
-      wheel: 'true'
 
-  build-docker:
-    needs: [build-and-test, build-wheel]
-    if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[docker]') }}
+  publish:
+    needs: build-wheel
     runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+    #if: ${{ startsWith(github.ref, 'refs/tags') }}
     steps:
-      - name: Docker
-        uses: ./.github/actions/build-docker-image
-        with:
-          snapatac2-version: ${{ needs.build-and-test.outputs.VERSION }}
-          python-version: 3.11
-          username: ${{ secrets.dockerhub_username }}
-          password: ${{ secrets.dockerhub_token }}
+    - name: Download wheel files from artifacts
+      id: download-artifact
+      uses: dawidd6/action-download-artifact@v2
+      with:
+        workflow: wheels.yml
+        commit: ${{ github.event.workflow_run.head_sha }}
+        name: dist
+        path: dist
+
+    - name: Publish to PyPI
+      uses: pypa/[email protected]
+
+#  build-docker:
+#    needs: [build-and-test, build-wheel]
+#    if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[docker]') }}
+#    runs-on: ubuntu-latest
+#    steps:
+#      - name: Docker
+#        uses: ./.github/actions/build-docker-image
+#        with:
+#          snapatac2-version: ${{ needs.build-and-test.outputs.VERSION }}
+#          python-version: 3.11
+#          username: ${{ secrets.dockerhub_username }}
+#          password: ${{ secrets.dockerhub_token }}

.github/workflows/wheels.yml

@@ -3,14 +3,8 @@
 # distribution to PyPI.
 name: build-wheels
 on:
-  workflow_call:
-    inputs:
-      wheel:
-        required: false
-        type: string
-      nightly:
-        required: false
-        type: string
+  workflow_call
+
 jobs:
   build_wheels:
     name: Wheel on ${{ matrix.os }} for ${{ matrix.python_version }}
@@ -78,43 +72,5 @@ jobs:
 
       - uses: actions/upload-artifact@v3
         with:
-          path: snapatac2-python/target/wheels/*.tar.gz
-
-  publish:
-    needs: [build_wheels, make_sdist]
-    runs-on: ubuntu-latest
-    if: (github.event_name == 'push' && startsWith(github.ref, 'refs/tags')) || inputs.nightly
-    steps:
-    - uses: actions/checkout@v4
-
-    - name: Delete Release
-      if: inputs.nightly
-      env:
-        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-      run: |
-        if gh release view nightly > /dev/null 2>&1; then
-          gh release delete nightly -y --cleanup-tag
-        fi
-
-    - uses: actions/download-artifact@v3
-      with:
-        name: artifact
-        path: dist
-
-    - name: Publish to PyPI
-      uses: pypa/[email protected]
-      if: startsWith(github.ref, 'refs/tags')
-      with:
-        user: __token__
-        password: ${{ secrets.pypi_password }}
-
-    - name: Create nightly release
-      uses: ncipollo/release-action@v1
-      if: inputs.nightly
-      with:
-        allowUpdates: true
-        tag: nightly
-        name: Nightly Release
-        prerelease: true
-        removeArtifacts: true
-        artifacts: "dist/*.whl,dist/*.tar.gz"
+          name: dist
+          path: snapatac2-python/target/wheels/*.tar.gz

snapatac2-python/Cargo.toml

@@ -50,4 +50,4 @@ features = ["extension-module", "anyhow"]
 
 [lib]
 name = "snapatac2"
-crate-type = ["cdylib"]
+crate-type = ["cdylib"]