set export_bed file format default to zstd #335
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| # This workflow triggers when commit message contains "wheel" or when a tag is pushed. | |
| # It will build a Python project using CIBW, then upload the wheel and source | |
| # distribution to PyPI. | |
| name: Build wheels | |
| on: | |
| push: | |
| workflow_call: | |
| inputs: | |
| wheel: | |
| required: false | |
| type: string | |
| jobs: | |
| build_wheels: | |
| name: Wheel on ${{ matrix.os }} for ${{ matrix.python_version }} | |
| runs-on: ${{ matrix.os }} | |
| if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, 'wheel') || inputs.wheel }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-11] | |
| python_version: ["cp39-*", "cp310-*", "cp311-*"] | |
| env: | |
| CIBW_BUILD_VERBOSITY: 1 | |
| CIBW_BEFORE_ALL_LINUX: > | |
| curl https://sh.rustup.rs -sSf | sh -s -- -y && yum install -y openssl-devel zlib-devel | |
| CIBW_ARCHS_LINUX: "auto64" | |
| CIBW_ENVIRONMENT: 'PATH="$PATH:$HOME/.cargo/bin"' | |
| CIBW_SKIP: "pp* *-win32 *-musllinux*" | |
| CIBW_BUILD: ${{ matrix.python_version }} | |
| CIBW_TEST_REQUIRES: pytest hypothesis | |
| CIBW_TEST_COMMAND: "pytest {project}/snapatac2-python/tests" | |
| steps: | |
| - name: Checkout code | |
| uses: nschloe/action-cached-lfs-checkout@v1 | |
| - uses: ./.github/actions/setup-rust | |
| - if: runner.os != 'Linux' | |
| name: Setup env when not using docker | |
| run: python -m pip install --upgrade wheel setuptools setuptools-rust | |
| # Used to host cibuildwheel | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel==2.16.2 | |
| - name: Build wheels | |
| run: python -m cibuildwheel --output-dir wheelhouse snapatac2-python | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: ./wheelhouse/*.whl | |
| make_sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| if: ${{ startsWith(github.ref, 'refs/tags/') }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - name: Install setuptools and setuptools-rust | |
| run: | | |
| python -m pip install --upgrade wheel setuptools setuptools-rust | |
| - name: Build sdist | |
| run: python setup.py sdist | |
| working-directory: snapatac2-python | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: snapatac2-python/dist/*.tar.gz | |
| upload_all: | |
| needs: [build_wheels, make_sdist] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/[email protected] | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_password }} |