update document #156
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| name: test-python-package | |
| on: [push, pull_request] | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: nschloe/action-cached-lfs-checkout@v1 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - uses: ./.github/actions/setup-rust | |
| with: | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pip install --user --upgrade pip | |
| pip install --user pytest hypothesis==6.72.4 wheel | |
| - name: Build Python package | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/snapatac2-python | |
| pip install --user . | |
| pytest tests | |
| - uses: ./.github/actions/build-docs | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} | |
| build-wheel: | |
| needs: build-and-test | |
| if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[wheel]') }} | |
| uses: kaizhang/SnapATAC2/.github/workflows/wheels.yml@main | |
| publish: | |
| needs: build-wheel | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| if: ${{ startsWith(github.ref, 'refs/tags') }} | |
| steps: | |
| - name: Download wheel files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: dist | |
| pattern: snapatac2-* | |
| merge-multiple: true | |
| - name: Publish to PyPI | |
| uses: pypa/[email protected] | |
| # build-docker: | |
| # needs: [build-and-test, build-wheel] | |
| # if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[docker]') }} | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Docker | |
| # uses: ./.github/actions/build-docker-image | |
| # with: | |
| # snapatac2-version: ${{ needs.build-and-test.outputs.VERSION }} | |
| # python-version: 3.11 | |
| # username: ${{ secrets.dockerhub_username }} | |
| # password: ${{ secrets.dockerhub_token }} |