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Update getBootTrees
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justincbagley authored Apr 13, 2020
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2 changes: 1 addition & 1 deletion bin/getBootTrees
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Expand Up @@ -218,7 +218,7 @@ USAGE="Usage: $(basename "$0") [OPTION]...
${bold}OVERVIEW${reset}
THIS SCRIPT was designed to run in a current working directory where the MAGNET pipeline
in PIrANHA v0.3a2 (Bagley 2020) has been run to estimate maximum-likelihood (ML) gene trees
in PIrANHA v0.4a (Bagley 2020) has been run to estimate maximum-likelihood (ML) gene trees
in RAxML v8+ (Stamatakis 2014) for a set of loci from DNA sequence data. Given such a
workspace, this script organizes the bootstrap trees resulting from all RAxML runs, in
subfolders of the current directory. The getBootTrees function is already run during the
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