purging biocmask from existance

jtlandis · Oct 18, 2024 · 499d871 · 499d871
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diff --git a/LICENSE b/LICENSE
@@ -1,2 +1,2 @@
 YEAR: 2024
-COPYRIGHT HOLDER: biocmask authors
+COPYRIGHT HOLDER: plyxp authors
diff --git a/LICENSE.md b/LICENSE.md
@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2024 biocmask authors
+Copyright (c) 2024 plyxp authors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/NEWS b/NEWS
@@ -2,29 +2,29 @@
 
 * Package renamed to `plyxp` to be more specific about its functionality
 
-## biocmask 0.99.18
+## plyxp 0.99.18
 
 * messages checking for conflicts use `cli::` methods for pretty printing
 * Vignette typo correction
 
-## biocmask 0.99.13
+## plyxp 0.99.13
 
 * `print.SummarizedExperiment` has been renamed to 
   `show_tidy.SummarizedExperiment` and `show_tidy` is exported as an S3 generic.
 * Adjust show function display original show method by default. using 
   `show_tidy()` is now opt-in via options or `use_show_tidy()`.
 * Verbose messages checking if `tidySummarizedExperiment` is already attached or
-  ever becomes loaded with `biocmask`.
+  ever becomes loaded with `plyxp`.
 * change README and Vignette explaining this package provides an alternative 
   approach to `tidySummarizedExperiment` to manipulating `SummarizedExperiment`
   objects. For now they are exclusive in their functionality, but there may be
   plans to reconsile conflicts in the future!
 
-## biocmask 0.99.12
+## plyxp 0.99.12
 
 * developer subscribed to bioc-devel mailing list
 * used `<-` assignment instead of `=` in top-level functions
 
-## biocmask 0.99.11
+## plyxp 0.99.11
 
 Biocondcutor Submission version!
diff --git a/R/data.R b/R/data.R
@@ -1,4 +1,4 @@
-#' @title Biocmask Simple Example Summarized Experiment
+#' @title Plyxp Simple Example Summarized Experiment
 #' 
 #' @description
 #' A small data SummarizedExperiment Object of 20 observations, 5 rows and 4 

diff --git a/R/biocmask-R6-manager.R → R/plyxp-R6-manager.R b/R/biocmask-R6-manager.R → R/plyxp-R6-manager.R
diff --git a/R/biocmask-R6.R → R/plyxp-R6.R b/R/biocmask-R6.R → R/plyxp-R6.R
diff --git a/R/biocmask-quos.R → R/plyxp-quos.R b/R/biocmask-quos.R → R/plyxp-quos.R
diff --git a/R/biocmask.R → R/plyxp.R b/R/biocmask.R → R/plyxp.R
@@ -1,6 +1,6 @@
 # @seealso [plyxp::PlyxpMaskManager]
 
-#' @title New Biocmask
+#' @title New Plyxp mask
 #' @name new_plyxp_manager
 #' @description
 #' Create a plyxp for an object

diff --git a/man/se_simple.Rd b/man/se_simple.Rd
diff --git a/tests/testthat/test_biocmask_R6.R → tests/testthat/test_plyxp_R6.R b/tests/testthat/test_biocmask_R6.R → tests/testthat/test_plyxp_R6.R
diff --git a/tests/testthat/test_biocmask_manager.R → tests/testthat/test_plyxp_manager.R b/tests/testthat/test_biocmask_manager.R → tests/testthat/test_plyxp_manager.R