Add the files from local repo to git hub repo

.gitignore

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+# Byte-compiled Python files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Jupyter Notebook checkpoints
+.ipynb_checkpoints/
+
+# R specific
+.Rhistory
+.RData
+.Ruserdata
+.Rproj.user/
+
+# Shell script temporary files
+*.sh~
+*.bak
+*.tmp
+
+# Virtual environments
+env/
+venv/
+ENV/
+.venv/
+.virtualenv/
+
+# Python packaging files
+*.egg
+*.egg-info/
+dist/
+build/
+*.whl
+
+# Logs and database
+*.log
+*.sqlite
+*.db
+
+# Environment and config files
+.env
+
+# Data and results
+data/raw/*
+!data/raw/.gitkeep
+results/figures/*
+results/tables/*
+results/logs/*
+!results/figures/.gitkeep
+!results/tables/.gitkeep
+!results/logs/.gitkeep
+
+# Docker
+*.env
+.dockerignore
+
+# Pixi 
+.pixi
+
+# Miscellaneous
+.DS_Store
+Thumbs.db
+
+
+# IPython NB Checkpoints
+.ipynb_checkpoints/
+
+# exclude compiled binaries
+bin/
+
+# exclude data from source control by default
+/data/processed/
+/data/raw/
+
+# exclude external models from source control
+/src/external/

Dockerfile

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+FROM python:3.9-slim
+
+# Install Pixi
+
+FROM ghcr.io/prefix-dev/pixi:latest
+
+# Set working directory
+WORKDIR /project
+
+# Copy project files
+COPY . .
+
+# Install dependencies
+RUN cd /project
+RUN pixi install
+
+# Default command
+CMD ["pixi", "run", "preprocess"]
+

LICENSE

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+BSD License
+
+Copyright (c) 2024, Julian
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice, this
+  list of conditions and the following disclaimer in the documentation and/or
+  other materials provided with the distribution.
+
+* Neither the name of Bios259_Practice nor the names of its
+  contributors may be used to endorse or promote products derived from this
+  software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
+INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
+OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
+OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

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+
+# Gapminder Project: Reproducible workflow with Pixi
+
+## Task description
+This project uses the Gapminder dataset to explore global development indicators like life expectancy, GDP per capita, and population.
+
+The workflow includes:
+- Data preprocessing
+- Analysis by continent
+- Visualization of results
+
+## Setup Instructions
+
+### 1. **Create a reproducible research using cookiecutter**: 
+
+Here is the command to install and start the project using cookiecutter.
+```bash
+mamba install cookiecutter jinja2-time
+```
+```bash
+cookiecutter gh:bios259/cookie-for-reproducible-research
+```
+You can also check the GitHub repo to install cookiecutter and create a project - https://github.com/bios259/cookie-for-reproducible-research
+
+
+### 2. **Copy necessary from this repo**:
+Copy the necessary files (scripts and data) from this repo to making the project as Pixi and add the scripts and data.
+
+Check the `pixi.toml` file for more details.
+
+### 3. **Install Pixi packages and run the Pixi tasks**:
+
+- Install pixi dependencies after copying the pixi.toml:
+
+```bash
+pixi install
+```
+- Preprocess the data:
+
+```bash
+pixi run preprocess
+```
+
+- Analyze the data:
+```bash
+pixi run analyze
+```
+
+- Visualize the results:
+```bash
+pixi run visualize
+```
+
+### 4. **Run with Docker**:
+
+Build and run the Docker container:
+```bash
+docker build -t gapminder-project .
+docker run -v $(pwd):/app -it gapminder-project
+```
+
+## Results
+- **Cleaned Data**:
+`data/processed/cleaned_gapminder.csv`
+
+- **Summary Table**:
+`results/tables/continent_summary.csv`
+
+- **Figures**:
+  - Life Expectancy: `results/figures/life_expectancy_over_time.png`
+  - GDP per Capita: `results/figures/gdp_per_capita_distribution.png`