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Issues list

Non-indexed Mode enhancement New feature or request
#50 opened Aug 2, 2021 by Merritt-Brian
Permission denied OR Command Error non-fastq files in fastq folder(s) in Module 4 bug Something isn't working
#49 opened Apr 29, 2021 by Merritt-Brian
1
Ignore Misnamed or Extra Barcodes enhancement New feature or request question Further information is requested
#48 opened Apr 29, 2021 by Merritt-Brian
pool figures run off page
#46 opened Mar 25, 2021 by tmehoke
awk is unstable in some places between mawk and gawk
#41 opened Mar 4, 2021 by tmehoke
check issues with using relative path instead of absolute path
#31 opened Feb 19, 2021 by tmehoke
flu primer scheme BED files need to be named correctly
#30 opened Feb 19, 2021 by tmehoke
manage pipeline in central Makefile
#28 opened Feb 19, 2021 by tmehoke
nextstrain not installed in image
#26 opened Feb 18, 2021 by tmehoke
FASTQ files are fully duplicated through FASTQ, SAM, and BAM files in modules 1, 2, and 3
#22 opened Feb 17, 2021 by tmehoke
@tmehoke
don't assume NB barcodes in manifest file for module 1
#18 opened Jan 22, 2021 by tmehoke
@tmehoke @howsercw @kennethbowden
1
relax 'No' flag to allow more detailed inspection of 'Maybe' flags
#15 opened Jan 11, 2021 by tmehoke
1
add an argument to receive the selected fastq directory into module 1
#14 opened Jan 8, 2021 by tmehoke
demux all possible barcodes in step 1
#8 opened Jan 4, 2021 by tmehoke
add outer wrapper for steps 2-4 to run through all samples in manifest
#7 opened Jan 4, 2021 by tmehoke
check barcode mismatch in demux step
#1 opened Dec 31, 2020 by tmehoke
1
ProTip! What’s not been updated in a month: updated:<2024-12-27.