A REST API for geographically distributed allele frequency data. This serves as the backend for the GGV browser (http://popgen.uchicago.edu/ggv) and is part of a BD2K Targeted Software Development project.
The API was built using ...
- Flask-RESTful
- Flask-SQLAlchemy
- sqlite
Example to pull SNP frequencies per population from 1000 genomes using chr / pos: (http://popgen.uchicago.edu/ggv_api/freq_table?data=%221000genomes_phase3_table%22&chr=1&pos=3072692)
Using rsid: (http://popgen.uchicago.edu/ggv_api/freq_table?data=%221000genomes_phase3_table%22&rsID=rs12632844)
A random SNP: (http://popgen.uchicago.edu/ggv_api/freq_table?data=%221000genomes_phase3_table%22&random_snp=True)
- 1000 Genomes
- HGDP
- POPRES
- hg18 rsIDs
- hg19 rsIDs