fix select app default altloc

jamesmkrieger · Nov 2, 2023 · 8ecba6a · 8ecba6a
1 parent e5d0c8d
commit 8ecba6a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/prody/apps/prody_apps/prody_select.py b/prody/apps/prody_apps/prody_select.py
@@ -35,7 +35,7 @@ def prody_select(selstr, *pdbs, **kwargs):
     prefix = kwargs.get('prefix', None)
     suffix = kwargs.get('suffix', '_selected')
     output = kwargs.get('output', None)
-    altloc = kwargs.get('altloc', None)
+    altloc = kwargs.get('altloc', 'all')
 
     for pdb in pdbs:
         pdb = parsePDB(pdb, altloc=altloc)
@@ -83,7 +83,7 @@ def addCommand(commands):
         type=str, help=('output filename prefix (default: PDB filename)'))
 
     group.add_argument('-L', '--altloc', dest='altloc', metavar='STR',
-        type=str, help=('altloc (default: None (take all))'))
+        type=str, default='all', help=('altloc (default: %(default)s)'))
 
     group.add_argument('-x', '--suffix', dest='suffix', metavar='STR',
         type=str, default='_selected',