update blat URL to use https protocol

igvteam · Nov 28, 2023 · ff18867 · ff18867
1 parent 4eacfac
commit ff18867
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/src/main/java/org/broad/igv/prefs/IGVPreferences.java b/src/main/java/org/broad/igv/prefs/IGVPreferences.java
@@ -255,7 +255,6 @@ private void updateCaches(String key, String value) {
         if (booleanCache.containsKey(key)) {
             booleanCache.put(key, Boolean.valueOf(value));
         }
-        colorScaleCache.remove(key); //TODO color scale cache doesn't use key strings so something here is wrong.
         objectCache.remove(key);
         mutationColorScheme = null;
     }

diff --git a/src/main/java/org/broad/igv/util/blat/BlatClient.java b/src/main/java/org/broad/igv/util/blat/BlatClient.java
@@ -98,6 +98,9 @@ public static List<PSLRecord> blat(String db, String userSeq) throws IOException
                         params.put("db", dbEncoded);
                         params.put("type", "DNA");
                         params.put("output", "json");
+
+                        //System.out.println(urlpref + "?userSeq=" + userSeq + "&db=" + db + "&type=DNA&output=json");
+                        //jsonString = HttpUtils.getInstance().getContentsAsJSON(new URL(urlpref + "?userSeq=" + userSeq + "&db=" + db + "&type=DNA&output=json"));
                         jsonString = HttpUtils.getInstance().doPost(new URL(urlpref), params);
                     }
 

diff --git a/src/main/resources/org/broad/igv/prefs/preferences.tab b/src/main/resources/org/broad/igv/prefs/preferences.tab
@@ -267,7 +267,7 @@ MASTER_RESOURCE_FILE_KEY	Data registry URL	string	https://data.broadinstitute.or
 PROVISIONING.URL	OAuth provisioning URL	string	null
 ---
 
-BLAT_URL	BLAT URL	String	http://genome.ucsc.edu/cgi-bin/hgBlat
+BLAT_URL	BLAT URL	String	https://genome.ucsc.edu/cgi-bin/hgBlat
 ---
 
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