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ideaconsult · Oct 19, 2024 · c2f400f · c2f400f
1 parent 7a59e04
commit c2f400f
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Showing 5 changed files with 117 additions and 3 deletions.
diff --git a/ambit2-all/ambit2-base/src/main/java/ambit2/base/data/study/Protocol.java b/ambit2-all/ambit2-base/src/main/java/ambit2/base/data/study/Protocol.java
@@ -3577,6 +3577,32 @@ public boolean deprecated() {
 				return true;
 			}
 		},
+		BAO_0003006_SECTION {
+		    @Override
+            public String toString() {
+                return "Reporter gene assay";
+            }
+
+            @Override
+            public String getNumber() {
+                return "BAO_0003006";
+            }
+
+            @Override
+            public String getTopCategory() {
+                return "TOX";
+            }
+
+            @Override
+            public int getSortingOrder() {
+                return 1013;
+            }
+
+            public String getOntologyURI() {
+                return "http://purl.obolibrary.org/obo/BAO_0003006";
+            }
+
+		},
 		// Immunotoxicity
 		NPO_1339_SECTION {
 			@Override
@@ -3680,6 +3706,28 @@ public int getSortingOrder() {
 			}
 
 		},
+		PROCESS_SECTION {
+            @Override
+            public String getNumber() {
+                return "99.0.0";
+            }
+
+            @Override
+            public String getTopCategory() {
+                return "MANUFACTURE";
+            }
+
+            @Override
+            public String toString() {
+                return "Manufacturing Process";
+            }
+
+            @Override
+            public int getSortingOrder() {
+                return 990000;
+            }
+
+        },		
 		EXPOSURE_SECTION {
 			@Override
 			public String getNumber() {

diff --git a/ambit2-apps/ambit2-www/src/main/webapp/scripts/config-study.js b/ambit2-apps/ambit2-www/src/main/webapp/scripts/config-study.js
@@ -233,6 +233,13 @@ var config_study = {
 			"protocol" : config_npo["protocol"],
 			"interpretation" : config_npo["interpretation"]
 		},
+		"BAO_0003006_SECTION" : {
+			"parameters" : config_bao["parameters"],
+			"effects" : config_bao["effects"],
+			"conditions" : config_bao["conditions"],
+			"protocol" : config_bao["protocol"],
+			"interpretation" : config_bao["interpretation"]			
+		},
 		"BAO_0002189_SECTION" : {
 			"parameters" : config_bao["parameters"],
 			"effects" : config_bao["effects"],
@@ -1177,6 +1184,30 @@ var config_study = {
 			"conditions" : config_exposure["conditions"],
 			"protocol" : config_exposure["protocol"],
 			"interpretation" : config_exposure["interpretation"]
+		},
+		"PROCESS_SECTION" : {
+			"parameters" : config_bao["parameters"],
+			"effects" : {
+				"endpoint" : {
+					"iOrder" : -9,
+					"bVisible" : false,
+					"inMatrix" : false
+				},
+				"result" : {
+					"inMatrix" : false,
+					"bVisible" : false,					
+				},
+				"text" : {
+					"sTitle" : "Result",
+					"inMatrix" : false,
+					"bVisible" : false,
+					"iOrder" : -7
+				}
+
+			},			
+			"conditions" : config_bao["conditions"],
+			"protocol" : config_bao["protocol"],
+			"interpretation" : config_bao["interpretation"]
 		}		
 
 	}

diff --git a/ambit2-apps/ambit2-www/src/main/webapp/scripts/config/i5.js b/ambit2-apps/ambit2-www/src/main/webapp/scripts/config/i5.js
@@ -3487,7 +3487,20 @@ var config_i5 = {
 		"protocol" : config_exposure["protocol"],
 		"interpretation" : config_exposure["interpretation"]
 	},		
-
+	"TO_ACUTE_PULMONARY_INSTILLATION_SECTION" : {
+		"parameters" : config_bao["parameters"],
+		"effects" : config_bao["effects"],
+		"conditions" : config_bao["conditions"],
+		"protocol" : config_bao["protocol"],
+		"interpretation" : config_bao["interpretation"]
+	},	
+	"PROCESS_SECTION" : {
+		"parameters" : config_bao["parameters"],
+		"effects" : config_bao["effects"],
+		"conditions" : config_bao["conditions"],
+		"protocol" : config_bao["protocol"],
+		"interpretation" : config_bao["interpretation"]
+	},
 	"IMPURITY_SECTION" : {
 		"parameters" : config_bao["parameters"],
 		"effects" : config_bao["effects"],

diff --git a/ambit2-apps/ambit2-www/src/main/webapp/scripts/profile/enanomapper/bao.js b/ambit2-apps/ambit2-www/src/main/webapp/scripts/profile/enanomapper/bao.js
@@ -434,7 +434,16 @@ var config_bao = {
 		},
 		"total dose" : {
 			"bVisible" : true
-		}	
+		},
+
+		"activity_type" : {
+			"bVisible" : true,
+			"sTitle" : "Activity type"
+		},
+		"temperature_range" : {
+			"bVisible" : true,
+			"sTitle" : "Temperature range"
+		}
 	},
 	"interpretation" : {
 		"result" : {

diff --git a/ambit2-apps/ambit2-www/src/main/webapp/scripts/profile/enanomapper/i5.js b/ambit2-apps/ambit2-www/src/main/webapp/scripts/profile/enanomapper/i5.js
@@ -821,6 +821,19 @@ var config_i5 = {
 		"conditions" : config_exposure["conditions"],
 		"protocol" : config_exposure["protocol"],
 		"interpretation" : config_exposure["interpretation"]
+	},
+	"PROCESS_SECTION" : {
+		"parameters" : config_bao["parameters"],
+		"effects" : config_bao["effects"],
+		"conditions" : config_bao["conditions"],
+		"protocol" : config_bao["protocol"],
+		"interpretation" : config_bao["interpretation"]
+	},
+		"TO_ACUTE_PULMONARY_INSTILLATION_SECTION" : {
+		"parameters" : config_bao["parameters"],
+		"effects" : config_bao["effects"],
+		"conditions" : config_bao["conditions"],
+		"protocol" : config_bao["protocol"],
+		"interpretation" : config_bao["interpretation"]
 	}
-
 }