--print-protein prints reference protein sequence for gene annotation

humanlongevity · May 12, 2016 · 71c7945 · 71c7945
1 parent 34febb3
commit 71c7945
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/transvar/region.py b/transvar/region.py
@@ -298,7 +298,7 @@ def annotate_gene(args, q, tpts, db):
     for t in tpts:
         r = Record()
         r.chrm = t.chrm
-        r.gene = q.tok
+        r.gene = q.gene.name
         r.gnuc_range = '%d_%d' % (t.beg, t.end)
         r.tnuc_range = '%d_%d' % (1, t.cdslen())
         if t.strand == '+':

diff --git a/transvar/version.py b/transvar/version.py
@@ -1 +1 @@
-__version__ = '2.2.9.20160503'
+__version__ = '2.2.10.20160512'
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		__version__ = '2.2.9.20160503'
		__version__ = '2.2.10.20160512'