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cleanup names for antimicrobiology
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@costateixeira
costateixeira committed Dec 23, 2024
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20 changes: 10 additions & 10 deletions input/fsh/examples-antibiotics/Bundle-getdatatocollect-a-data.fsh
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Instance: getdatatocollect-a-data
InstanceOf: Bundle
Title: "Antibiology - S2 Get data to collect - Request - 2. - Bundle"
Description: "Antibiology - S2 Get data to collect - Request - 2. Bundle"
Title: "Antimicrobiology - S2 Get data to collect - Request - 2. - Bundle"
Description: "Antimicrobiology - S2 Get data to collect - Request - 2. Bundle"
Usage: #example
* type = #collection
* entry[0].resource = patient-v
Expand All @@ -18,8 +18,8 @@ Usage: #example

Instance: patient-v
InstanceOf: Patient
Title: "Antibiology - S2 Get data to collect - Request - 1. Patient V"
Description: "Antibiology - S2 Get data to collect - Request - 1 - Patient V"
Title: "Antimicrobiology - S2 Get data to collect - Request - 1. Patient V"
Description: "Antimicrobiology - S2 Get data to collect - Request - 1 - Patient V"
Usage: #example
* active = true
* gender = #female
Expand All @@ -28,8 +28,8 @@ Usage: #example

Instance: vulvovaginitis
InstanceOf: Condition
Title: "Antibiology - S2 Get data to collect - Request - 2.1. Diagnostic hypothesis - vulvovaginitis"
Description: "Antibiology - S2 Get data to collect - Request - 2.1. Diagnostic hypothesis - vulvovaginitis"
Title: "Antimicrobiology - S2 Get data to collect - Request - 2.1. Diagnostic hypothesis - vulvovaginitis"
Description: "Antimicrobiology - S2 Get data to collect - Request - 2.1. Diagnostic hypothesis - vulvovaginitis"
Usage: #example
* id = "vulvovaginitis"
* clinicalStatus = $condition-clinical#active "Active"
Expand All @@ -45,8 +45,8 @@ Usage: #example

Instance: allergy-to-sulfonamide
InstanceOf: AllergyIntolerance
Title: "Antibiology - S2 Get data to collect - Request - 2.2. Known allergy - sulfonamide"
Description: "Antibiology - S2 Get data to collect - Request - 2.2. Known allergy - sulfonamide"
Title: "Antimicrobiology - S2 Get data to collect - Request - 2.2. Known allergy - sulfonamide"
Description: "Antimicrobiology - S2 Get data to collect - Request - 2.2. Known allergy - sulfonamide"
Usage: #example
* code = $sct#91939003 "Allergy to sulfonamide"
* patient = Reference(patient-y)
Expand All @@ -55,8 +55,8 @@ Usage: #example

Instance: proposal-clindamycin
InstanceOf: MedicationRequest
Title: "Antibiology - S2 Get data to collect - Request - 2.3. Considered treatment - clindamycin"
Description: "Antibiology - S2 Get data to collect - Request - 2.3. Considered treatment - clindamycin"
Title: "Antimicrobiology - S2 Get data to collect - Request - 2.3. Considered treatment - clindamycin"
Description: "Antimicrobiology - S2 Get data to collect - Request - 2.3. Considered treatment - clindamycin"
Usage: #example
//* code = $sct#28442001 "Allergy to sulfonamides"
* subject = Reference(patient-y)
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18 changes: 8 additions & 10 deletions input/fsh/examples-antibiotics/Bundle-getdatatocollect-a-return.fsh
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Instance: getdatatocollect-a-return
InstanceOf: Bundle
Title: "Antibiology - S2 Get data to collect - Response - 1. Bundle"
Description: "Antibiology - S2 Get data to collect - Response - 1. Bundle"
Title: "Antimicrobiology - S2 Get data to collect - Response - 1. Bundle"
Description: "Antimicrobiology - S2 Get data to collect - Response - 1. Bundle"
Usage: #example
* type = #collection
* entry[0].resource = getdatatocollect-a-return-group
Expand All @@ -17,8 +17,8 @@ Usage: #example

Instance: getdatatocollect-a-return-group
InstanceOf: RequestGroup
Title: "Antibiology - S2 Get data to collect - Response - 1.1. RequestGroup"
Description: "Antibiology - S2 Get data to collect - Response - 1.1. RequestGroup"
Title: "Antimicrobiology - S2 Get data to collect - Response - 1.1. RequestGroup"
Description: "Antimicrobiology - S2 Get data to collect - Response - 1.1. RequestGroup"
Usage: #example
// * contained[+] = collect-pregnancy-status
// * contained[+] = collect-past-antibiotic-use
Expand All @@ -39,8 +39,8 @@ Usage: #example


Instance: collect-information-a
Title: "Antibiology - S2 Get data to collect - Response - 1.2. Task for collecting information"
Description: "Antibiology - S2 Get data to collect - Response - 1.2. Task for collecting information"
Title: "Antimicrobiology - S2 Get data to collect - Response - 1.2. Task for collecting information"
Description: "Antimicrobiology - S2 Get data to collect - Response - 1.2. Task for collecting information"
InstanceOf: Task
Usage: #example
//* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-questionnairetask"
Expand All @@ -53,8 +53,6 @@ Usage: #example
* valueReference.reference = Canonical(q-collect-information-a)




Instance: condition-valueset
InstanceOf: ValueSet
Usage: #example
Expand All @@ -73,8 +71,8 @@ Usage: #example


Instance: q-collect-information-a
Title: "Antibiology - S2 Get data to collect - Response - 1.3. Questionnaire"
Description: "Antibiology - S2 Get data to collect - Response - 1.3. Questionnaire"
Title: "Antimicrobiology - S2 Get data to collect - Response - 1.3. Questionnaire"
Description: "Antimicrobiology - S2 Get data to collect - Response - 1.3. Questionnaire"
InstanceOf: Questionnaire
Usage: #example
//* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-collectinformationactivity"
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8 changes: 4 additions & 4 deletions input/fsh/examples-antibiotics/Bundle-getrecommendations-a-data.fsh
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Instance: getrecommendations-a-data
Title: "Antibiology - S3 Get Recommendations - Request- 1. Bundle"
Description: "Antibiology - S3 Get Recommendations - Request- 1. Bundle"
Title: "Antimicrobiology - S3 Get Recommendations - Request- 1. Bundle"
Description: "Antimicrobiology - S3 Get Recommendations - Request- 1. Bundle"
InstanceOf: Bundle
Usage: #example
* type = #collection
Expand All @@ -18,8 +18,8 @@ Usage: #example

Instance: qresponse-v
InstanceOf: QuestionnaireResponse
Title: "Antibiology - S3 Get Recommendations - Request- 1.1. QuestionnaireResponse"
Description: "Antibiology - S3 Get Recommendations - Request- 1.1. QuestionnaireResponse"
Title: "Antimicrobiology - S3 Get Recommendations - Request- 1.1. QuestionnaireResponse"
Description: "Antimicrobiology - S3 Get Recommendations - Request- 1.1. QuestionnaireResponse"

Usage: #example
* status = #completed
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28 changes: 14 additions & 14 deletions input/fsh/examples-antibiotics/Bundle-getrecommendations-a-return.fsh
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Instance: getrecommendations-a-return
Title: "Antibiology - S3 Get Recommendations - Response - 1. Bundle"
Description: "Antibiology - S3 Get Recommendations - Response - 1. Bundle"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1. Bundle"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1. Bundle"
InstanceOf: Bundle
Usage: #example
* type = #collection
Expand All @@ -19,8 +19,8 @@ Usage: #example

Instance: getrecommendations-a-return-group
InstanceOf: RequestGroup
Title: "Antibiology - S3 Get Recommendations - Response - 1.1. RequestGroup"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1. RequestGroup"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1. RequestGroup"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1. RequestGroup"
Usage: #example
* id = "getrecommendations-a-return-group"
* status = #active
Expand All @@ -47,8 +47,8 @@ Usage: #example

Instance: ab-advice
InstanceOf: Communication
Title: "Antibiology - S3 Get Recommendations - Response - 1.1.1. option 1 - Generic Antibiotic Advice"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1.1. option 1 - Generic Antibiotic Advice"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.1. option 1 - Generic Antibiotic Advice"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.1. option 1 - Generic Antibiotic Advice"
Usage: #example
* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-medicationrequest"
* extension
Expand All @@ -73,8 +73,8 @@ Usage: #example

Instance: metronidazol
InstanceOf: MedicationRequest
Title: "Antibiology - S3 Get Recommendations - Response - 1.1.2. option 2 - metronidazol"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1.2. option 2 - metronidazol"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.2. option 2 - metronidazol"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.2. option 2 - metronidazol"
Usage: #example
* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-medicationrequest"
* extension
Expand All @@ -89,8 +89,8 @@ Usage: #example

Instance: clindamycin
InstanceOf: MedicationRequest
Title: "Antibiology - S3 Get Recommendations - Response - 1.1.3. option 3 - clindamycin"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1.3. option 3 - clindamycin"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.3. option 3 - clindamycin"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.3. option 3 - clindamycin"
Usage: #example
* id = "30551ce1-5a28-4356-b684-1e639094ad24"
* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-medicationrequest"
Expand All @@ -107,8 +107,8 @@ Usage: #example

Instance: fluconazol
InstanceOf: MedicationRequest
Title: "Antibiology - S3 Get Recommendations - Response - 1.1.4. option 4 - fluconazol"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1.4. option 4 - fluconazol"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.4. option 4 - fluconazol"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.4. option 4 - fluconazol"
Usage: #example
* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-medicationrequest"
* extension
Expand All @@ -124,8 +124,8 @@ Usage: #example

Instance: miconazol
InstanceOf: MedicationRequest
Title: "Antibiology - S3 Get Recommendations - Response - 1.1.5. option 5 - miconazol"
Description: "Antibiology - S3 Get Recommendations - Response - 1.1.5. option 5 - miconazol"
Title: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.5. option 5 - miconazol"
Description: "Antimicrobiology - S3 Get Recommendations - Response - 1.1.5. option 5 - miconazol"
Usage: #example
* meta.profile = "http://hl7.org/fhir/uv/cpg/StructureDefinition/cpg-medicationrequest"
* extension
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6 changes: 3 additions & 3 deletions sushi-config.yaml
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Expand Up @@ -117,9 +117,9 @@ groups:
- PlanDefinition/GetRecommendations


Antibiology:
name: Antibiology
description: Antibiology PSS resource examples
Antimicrobiology:
name: Antimicrobiology
description: Antimicrobiology PSS resource examples
resources:
- Bundle/getdatatocollect-a-data
- Patient/patient-v
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