Linx:

- reportable fusions file context marked as 'Exon' since always reports the fused exon
hartwigmedical · Aug 26, 2019 · d26a335 · d26a335
1 parent b223244
commit d26a335
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/...a/com/hartwig/hmftools/common/variant/structural/annotation/ReportableGeneFusionFile.java b/...a/com/hartwig/hmftools/common/variant/structural/annotation/ReportableGeneFusionFile.java
@@ -107,9 +107,8 @@ public static String context(final Transcript transcript, int fusedExon)
             case TRANS_REGION_TYPE_UPSTREAM:
                 return "Promoter Region";
             case TRANS_REGION_TYPE_EXONIC:
-                return String.format("Exon %d", fusedExon);
             case TRANS_REGION_TYPE_INTRONIC:
-                return String.format("Intron %d", fusedExon);
+                return String.format("Exon %d", fusedExon);
         }
 
         return String.format("ERROR: %s", transcript.regionType());