Update tests.yml #12
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| name: Tests | |
| on: | |
| push: | |
| branch: | |
| - master | |
| pull_request: | |
| branch: | |
| - master | |
| jobs: | |
| build: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest,] # windows-latest, macos-13, maxos-latest] | |
| # python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
| python-version: ["3.9", ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # - name: Setup Python ${{matrix.python-version}} | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{matrix.python-version}} | |
| # - name: Upgrade pip | |
| # run: python -m pip install --upgrade pip | |
| # - name: Windows 3.6 Oddities | |
| # if: matrix.python-version == 3.6 && runner.os == 'Windows' | |
| # run: python -m pip install pwintypy==1.1.6 | |
| - name: Install Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| channels: conda-forge | |
| python-version: ${{matrix.python-version}} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install setuptools build pytest | |
| conda install numpy pytables matplotlib pandas | |
| - name: build phconvert | |
| run: | | |
| # python -m build | |
| # python -m pip install phconvert --find-links dist/ | |
| pip install . | |
| - name: Download files Unix | |
| if: runner.os != 'Windows' | |
| run: | | |
| cd notebooks/data | |
| wget https://ndownloader.figshare.com/files/3350666 -O dsdna_d7d17_50_50_1.set | |
| wget https://ndownloader.figshare.com/files/3350669 -O dsdna_d7d17_50_50_1.spc | |
| wget https://ndownloader.figshare.com/files/3350672 -O Pre.ht3 | |
| wget https://ndownloader.figshare.com/files/3350663 -O 0023uLRpitc_NTP_20dT_0.5GndCl.sm | |
| wget https://github.com/Photon-HDF5/phconvert/files/231343/Cy3.Cy5_diff_PIE-FRET.ptu.zip | |
| unzip Cy3.Cy5_diff_PIE-FRET.ptu.zip | |
| wget https://ndownloader.figshare.com/files/6955091 -O 161128_DM1_50pM_pH74.ptu | |
| wget https://ndownloader.figshare.com/files/14828594 -O 20161027_DM1_1nM_pH7_20MHz1.ptu | |
| wget https://ndownloader.figshare.com/files/13675271 -O TestFile_2.ptu | |
| wget https://ndownloader.figshare.com/files/14850533 -O trace_T2_300s_1_coincidence.ptu | |
| wget https://ndownloader.figshare.com/files/14890535 -O nanodiamant_histo.phu | |
| wget https://github.com/dwaithe/FCS_point_correlator/raw/master/focuspoint/topfluorPE_2_1_1_1.pt3 | |
| wget https://github.com/Photon-HDF5/phconvert/files/1380341/DNA_FRET_0.5nM.pt3.zip | |
| unzip DNA_FRET_0.5nM.pt3.zip | |
| wget https://github.com/Photon-HDF5/phconvert/files/1336330/data.zip | |
| unzip data.zip | |
| cd ../.. | |
| - name: Test project | |
| run: | | |
| pytest | |
| pip install pyyaml | |
| cd notebooks | |
| python -m ../tests/nbrun.py | |