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Merge develop into main#29

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Commits on Aug 20, 2024

• Pull the latest commit for the submodules

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• ops: update poetry.lock

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• deps: fix Pydantic BaseSettings import

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Commits on Aug 21, 2024

• updated pynanomapper.datamodel->pyambit imports

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• pyambit imports fixed

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• removed unused import

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• h5grove ^2.0.0 update

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• fastapi dep update

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• make result_uuid optional

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• ops: update CI, add git as dep in Docker

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• ops: fix pip Git deps incompat due to hash pinning

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Commits on Sep 3, 2024

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Commits on Sep 4, 2024

• initial migration of /query api

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• initial test for /query

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• numcompress dependency for knnquery argument

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• download service using pynanomapper clients package

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• not used

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• convertor service

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• updates

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Commits on Sep 12, 2024

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• injecting bearer token

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Commits on Sep 13, 2024

• test for /query

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• tests for /download

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• httpx is preferred in FastAIPI over requests

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• refactored to use httpx

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• explicit vector fields

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• deps: update

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• solr query in separate module

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• tests for file download

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• fix recursive_copy() producing empty HDF5 file

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• ops: hsds tests

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• base64 response test

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• ops: drop Python 3.9 support

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• write quotes in a different way

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• HSDS tests (#23)

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• make recursive_copy() work both ways

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• depr: 3.11: fix importlib.resources

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• depr: 3.12: fix datetime

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Commits on Sep 14, 2024

• make recursive_copy() work both ways (#24)

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• Fix deprecations (#22)

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• save uploaded files into temp file

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• /download working with all options

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• test cleanup

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• similarity query working

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• clean print

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• tests updated

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• hsds dataset

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• test for hsds/dataset

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Commits on Sep 15, 2024

• /query/field implementation

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• no auth handling for now

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• etag for the images

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• closing resources properly

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• /hsds/dataset for non- .cha implemented using solr

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• url encode domains in download links

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• ops: update docker deployment

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• ops: update docker deployment (#25)

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• ops: uvicorn is now reqd for deployment, sort deps

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• ops: bring back workdir

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• move all endpoints migrated from charisma-api under /db

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• ops: move cors to file config

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Commits on Sep 18, 2024

• moved the get_baseurl function to utils

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• configuration instead of hard coded solr settings

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Commits on Sep 19, 2024

• pass bearer tokens to solr and hsds

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• one more resource with token passing

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• exception handling

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• error message

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• let's try with protected solr collection

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• ops: quick fix tests

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• fix tests (#26)

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Commits on Sep 24, 2024

• handle the case

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Commits on Sep 25, 2024

• Merge branch 'main' into develop

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• ops: don't run actions on draft PRs

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Commits on Sep 29, 2024

• pictures improvements

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• unifying query spectrum preprocessing with rc2

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Commits on Nov 25, 2024

• Pull the latest commit for the submodules

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• ull the latest commit for the submodules

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• concise error message

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• flake8 happine888

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• more flake8 happine8

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• of course x should be x4search

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Commits on Nov 26, 2024

• docker: fix hash pinning in a differently wrong way

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• deps: update; pin h5pyd, pynanomapper, ramanchada2

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• remove now unnecessary submodules

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• docker: update for new dependency setup

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• ops: update dependabot config

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• ops: update poetry and cosign versions

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• this was an old attempt to provide API for calibration

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• Update dependencies config, ops improvements, fixes #21 (#36)

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• ops: fix dependabot

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• ops: fix dependabot (#37)

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• build(deps): bump actions/setup-python from 5.2.0 to 5.3.0

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• build(deps): bump actions/cache from 4.0.2 to 4.1.2

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• build(deps): bump sigstore/cosign-installer from 3.6.0 to 3.7.0

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• build(deps): bump actions/checkout from 4.1.7 to 4.2.2

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• build(deps): bump docker/build-push-action from 6.7.0 to 6.10.0

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