refactor(poetry) : use package local reference (#39) #164
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| name: Python Continuous Integration | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| env: | |
| PNPM_VERSION: 8.5.1 | |
| PYTHON_VERSION: 3.10.15 | |
| NODE_VERSION: 18 | |
| AZURE_RESOURCE_GROUP_NAME: "azure-ml-gui" | |
| AZURE_LOCATION: "northeurope" | |
| AZURE_ML_WORKSPACE_NAME: "cats-dogs-gui" | |
| AZURE_WEBAPP_NAME: "cats-dogs-gui" | |
| DELETE_WEBAPP: "false" | |
| DOCKER_API_IMAGE_NAME: "mlopspython-api" | |
| DOCKER_REPOSITORY: ${{ github.repository_owner }} | |
| DOCKER_WEBAPP_IMAGE_NAME: "mlopspython-webapp" | |
| DOCKER_REGISTRY: "ghcr.io" | |
| permissions: | |
| id-token: write | |
| contents: write | |
| packages: write | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter_python | |
| with: | |
| filters: | | |
| packages: | |
| - 'packages/**' | |
| production: | |
| - 'production/**' | |
| train: | |
| - 'train/**' | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Poetry dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --user poetry | |
| - name: Format with Black | |
| run: | | |
| poetry install | |
| poetry run black train | |
| poetry run black train --check | |
| - name: Lint with flake8 | |
| run: | | |
| poetry install | |
| poetry run flake8 . | |
| packages_unit_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --user poetry | |
| - name: Run unit tests Packages Extraction | |
| working-directory: packages/mlopspython-extraction | |
| run: | | |
| poetry install | |
| poetry run coverage run -m unittest tests.extraction_tests | |
| poetry run coverage report | |
| - name: Run unit tests Packages Inference | |
| working-directory: packages/mlopspython-inference | |
| run: | | |
| poetry install | |
| #poetry run coverage run -m unittest tests.inference_tests | |
| #poetry run coverage report | |
| train_unit_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --user poetry | |
| - name: Build packages | |
| run: | | |
| chmod +x ./Makefile | |
| ./Makefile | |
| - name: Run unit tests Extraction | |
| working-directory: train/extraction | |
| run: | | |
| poetry lock | |
| poetry install | |
| #poetry run coverage run -m unittest tests.extraction_test | |
| #poetry run coverage report | |
| - name: Run unit tests Label Split Data | |
| working-directory: train/label_split_data | |
| run: | | |
| poetry lock | |
| poetry install | |
| poetry run coverage run -m unittest tests.label_split_data_test | |
| poetry run coverage report | |
| #- name: Run unit tests Train | |
| # working-directory: train/train | |
| # run: | | |
| # poetry install --dev | |
| # poetry run python -m unittest tests.train_test | |
| #- name: Run unit tests Evaluate | |
| # working-directory: train/test | |
| # run: | | |
| # poetry install --dev | |
| # poetry run python -m unittest tests.evaluate_test | |
| tags: | |
| runs-on: ubuntu-latest | |
| needs: [train_unit_tests, packages_unit_tests] | |
| outputs: | |
| new_version: ${{ steps.tag.outputs.new_version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Bump version and push tag | |
| id: tag_version | |
| if: github.ref == 'refs/heads/main' | |
| uses: mathieudutour/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Add tag to output step for main branch | |
| id: tag | |
| run: | | |
| if [ '${{ github.ref }}' = 'refs/heads/main' ]; then | |
| echo "new_version=${{ steps.tag_version.outputs.new_version }}" >> $GITHUB_OUTPUT | |
| else | |
| echo "new_version=pr-${{ github.event.number }}-${{ github.run_number }}" >> $GITHUB_OUTPUT | |
| fi | |
| train: | |
| runs-on: ubuntu-latest | |
| environment: MLOpsPython | |
| needs: tags | |
| outputs: | |
| MODEL_VERSION: ${{ steps.train.outputs.MODEL_VERSION }} | |
| INTEGRATION_DATASET_VERSION: ${{ steps.train.outputs.INTEGRATION_DATASET_VERSION }} | |
| EXPERIMENT_ID: ${{ steps.train.outputs.EXPERIMENT_ID }} | |
| AZURE_RESOURCE_GROUP_NAME: ${{ env.AZURE_RESOURCE_GROUP_NAME }} | |
| AZURE_ML_WORKSPACE_NAME: ${{ env.AZURE_ML_WORKSPACE_NAME }} | |
| DOCKER_API_IMAGE_NAME: ${{ env.DOCKER_REPOSITORY }}/${{ env.DOCKER_API_IMAGE_NAME }} | |
| AZURE_LOCATION: ${{ env.AZURE_LOCATION }} | |
| DOCKER_REGISTRY: ${{ env.DOCKER_REGISTRY }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --user poetry | |
| - name: Build packages | |
| run: | | |
| chmod +x ./Makefile | |
| ./Makefile | |
| - name: azure login | |
| uses: azure/login@v1 | |
| with: | |
| creds: ${{secrets.AZURE_CREDENTIALS}} | |
| - name: Run Train Pipeline | |
| run: | | |
| chmod +x ./setup_AzureML.sh | |
| ./setup_AzureML.sh ${{ secrets.AZURE_SUBSCRIPTION_ID }} ${{ env.AZURE_RESOURCE_GROUP_NAME }} ${{ env.AZURE_ML_WORKSPACE_NAME }} ${{ env.AZURE_LOCATION }} | |
| chmod +x ./run_AzureML.sh | |
| ./run_AzureML.sh ${{ secrets.AZURE_SUBSCRIPTION_ID }} \ | |
| ${{ env.AZURE_RESOURCE_GROUP_NAME }} \ | |
| ${{ env.AZURE_ML_WORKSPACE_NAME }} \ | |
| ${{ env.AZURE_LOCATION }} \ | |
| "{\"git_head_ref\":\"${{ github.head_ref }}\",\"git\":\"${{ github.head_ref }}.${{ github.sha }}\",\"version\":\"${{ needs.tags.outputs.new_version }}\",\"triggering_actor\":\"${{github.triggering_actor}}\"}" > train_output.txt | |
| cat train_output.txt | |
| working-directory: train | |
| - name: download model | |
| id: train | |
| run: | | |
| MODEL_VERSION=$(python bin/retrieve_output.py ./train/train_output.txt model_version) | |
| echo "MODEL_VERSION=$MODEL_VERSION" >> $GITHUB_OUTPUT | |
| INTEGRATION_DATASET_VERSION=$(python bin/retrieve_output.py ./train/train_output.txt integration_dataset_version) | |
| echo "INTEGRATION_DATASET_VERSION=$INTEGRATION_DATASET_VERSION" >> $GITHUB_OUTPUT | |
| EXPERIMENT_ID=$(python bin/retrieve_output.py ./train/train_output.txt experiment_id) | |
| echo "EXPERIMENT_ID=$EXPERIMENT_ID" >> $GITHUB_OUTPUT | |
| mkdir model | |
| rm -r model | |
| mkdir model | |
| cd model | |
| DOWNLOAD_PATH=$PWD | |
| cd .. | |
| cd train | |
| chmod +x ./run_download_model.sh | |
| ./run_download_model.sh $MODEL_VERSION ${{ env.AZURE_RESOURCE_GROUP_NAME }} ${{ env.AZURE_ML_WORKSPACE_NAME }} ${{ env.AZURE_LOCATION }} ${{ secrets.AZURE_SUBSCRIPTION_ID }} $DOWNLOAD_PATH | |
| cd .. | |
| cd model | |
| # find files recursively and copy them to the current directory root | |
| find ./ -name '*.keras' -exec cp "{}" ./ \; | |
| find ./ -name '*.json' -exec cp "{}" ./ \; | |
| rm -r ./cats-dogs-others | |
| - name: Upload Model Build Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Publish model | |
| path: ./model | |
| - name: release | |
| uses: actions/create-release@v1 | |
| id: create_release | |
| if: github.ref == 'refs/heads/main' | |
| with: | |
| draft: false | |
| prerelease: false | |
| body: | | |
| ${{ needs.tags.outputs.changelog }} | |
| release_name: "v${{ needs.tags.outputs.new_version }}" | |
| tag_name: "v${{ needs.tags.outputs.new_version }}" | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| - name: Zip Release | |
| uses: TheDoctor0/[email protected] | |
| with: | |
| filename: mlopspython_model.zip | |
| path: . | |
| directory: ./model | |
| - name: upload artifact | |
| if: github.ref == 'refs/heads/main' | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ./model/mlopspython_model.zip | |
| asset_name: mlopspython_model.zip | |
| asset_content_type: application/zip | |
| build_docker_api: | |
| needs: [train, tags] | |
| uses: ./.github/workflows/docker_with_model.yml | |
| with: | |
| image_name: ${{ needs.train.outputs.DOCKER_API_IMAGE_NAME }} | |
| image_version: ${{ needs.tags.outputs.new_version }} | |
| image_build_args: "" | |
| image_context: ./production/api | |
| image_file: "./production/api/Dockerfile" | |
| model_version: ${{ needs.train.outputs.MODEL_VERSION }} | |
| resource_group: ${{ needs.train.outputs.AZURE_RESOURCE_GROUP_NAME }} | |
| workspace_name: ${{ needs.train.outputs.AZURE_ML_WORKSPACE_NAME }} | |
| location: ${{ needs.train.outputs.AZURE_LOCATION }} | |
| docker_registry: ${{ needs.train.outputs.DOCKER_REGISTRY }} | |
| secrets: | |
| DOCKER_USERNAME: ${{ github.actor }} | |
| DOCKER_PASSWORD: ${{ secrets.GITHUB_TOKEN }} | |
| AZURE_CREDENTIALS: ${{ secrets.AZURE_CREDENTIALS }} | |
| AZURE_SUBSCRIPTION_ID: ${{ secrets.AZURE_SUBSCRIPTION_ID }} | |
| deploy: | |
| environment: MLOpsPython | |
| runs-on: ubuntu-latest | |
| needs: [tags, build_docker_api, build_docker_webapp] | |
| steps: | |
| - name: azure login | |
| uses: azure/login@v1 | |
| with: | |
| creds: ${{secrets.AZURE_CREDENTIALS}} | |
| - name: Deploy container | |
| run: | | |
| # https://learn.microsoft.com/en-us/cli/azure/container?view=azure-cli-latest#az-container-create() | |
| az container create --resource-group ${{ env.AZURE_RESOURCE_GROUP_NAME}} --name ${{ env.AZURE_WEBAPP_NAME }} --dns-name-label ${{ env.AZURE_WEBAPP_NAME }} --image ${{ env.DOCKER_REGISTRY }}/${{ env.DOCKER_REPOSITORY }}/${{ env.DOCKER_API_IMAGE_NAME }}:${{ needs.tags.outputs.new_version }} --ports 5000 | |
| integration_tests: | |
| environment: MLOpsPython | |
| runs-on: ubuntu-latest | |
| needs: [deploy, train] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ env.PYTHON_VERSION }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --user poetry | |
| - name: azure login | |
| uses: azure/login@v1 | |
| with: | |
| creds: ${{secrets.AZURE_CREDENTIALS}} | |
| - name: Run Integration Test | |
| working-directory: production/integration | |
| run: | | |
| poetry install | |
| az extension add -n ml | |
| poetry run python azureml_run_pipeline.py \ | |
| --subscription_id ${{ secrets.AZURE_SUBSCRIPTION_ID }} \ | |
| --resource_group_name ${{ env.AZURE_RESOURCE_GROUP_NAME }} \ | |
| --workspace_name ${{ env.AZURE_ML_WORKSPACE_NAME }} \ | |
| --experiment_id ${{ needs.train.outputs.EXPERIMENT_ID }} \ | |
| --integration_dataset_name "cats-dogs-others-integration" \ | |
| --integration_dataset_version ${{ needs.train.outputs.INTEGRATION_DATASET_VERSION }} \ | |
| --url "http://${{ env.AZURE_WEBAPP_NAME }}.${{ env.AZURE_LOCATION }}.azurecontainer.io:5000/upload" > integration_output.txt | |
| cat integration_output.txt | |
| - name: Delete Environment | |
| run: | | |
| if [ "${{ env.DELETE_WEBAPP }}" = "true" ]; then | |
| az container delete --resource-group ${{ env.AZURE_RESOURCE_GROUP_NAME}} --name ${{ env.AZURE_WEBAPP_NAME }} --yes | |
| fi | |
| webapp_unit_tests: | |
| runs-on: ubuntu-latest | |
| environment: MLOpsPython | |
| outputs: | |
| DOCKER_WEBAPP_IMAGE_NAME: ${{ env.DOCKER_REPOSITORY }}/${{ env.DOCKER_WEBAPP_IMAGE_NAME }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: dorny/paths-filter@v2 | |
| id: filter_webapp | |
| with: | |
| filters: | | |
| webapp: | |
| - 'webapp/**' | |
| - uses: actions/setup-node@v2 | |
| with: | |
| node-version: '18' | |
| - name: Install dependencies > UnitTest > Build | |
| working-directory: production/webapp | |
| run: | | |
| npm ci | |
| npm run coverage | |
| npm run build | |
| - name: Upload WebApp Build Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Publish webapp | |
| path: ./production/webapp/build | |
| build_docker_webapp: | |
| needs: [webapp_unit_tests, tags, train] | |
| uses: ./.github/workflows/docker.yml | |
| with: | |
| image_name: ${{ needs.webapp_unit_tests.outputs.DOCKER_WEBAPP_IMAGE_NAME }} | |
| image_version: ${{ needs.tags.outputs.new_version }} | |
| image_build_args: "" | |
| image_context: ./production/webapp | |
| image_file: "./production/webapp/Dockerfile" | |
| docker_registry: ${{ needs.train.outputs.DOCKER_REGISTRY }} | |
| secrets: | |
| DOCKER_USERNAME: ${{ github.actor }} | |
| DOCKER_PASSWORD: ${{ secrets.GITHUB_TOKEN }} | |
| change_log: | |
| runs-on: ubuntu-latest | |
| needs: [ integration_tests ] | |
| environment: MLOpsPython | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.GIT_TOKEN }} | |
| fetch-depth: 0 | |
| - name: Commit and push | |
| if: github.ref == 'refs/heads/main' | |
| run: | | |
| git config --global user.name "GitHub" | |
| git config --global user.email "[email protected]" | |
| PROJECT_URL="${GITHUB_SERVER_URL}/${GITHUB_REPOSITORY}/commit" | |
| chmod +x ./bin/generate-changelog.sh | |
| ./bin/generate-changelog.sh "$PROJECT_URL" | |
| git add ./CHANGELOG.md | |
| git commit -m "[skip ci] Generate changelog to version ${{ steps.tag.outputs.new_version }}" | |
| git push -f --set-upstream origin "HEAD:main" --follow-tags |