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Update doc to simplify case-study pointers
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kishwarshafin authored and copybara-github committed Dec 3, 2024
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7 changes: 4 additions & 3 deletions README.md
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Expand Up @@ -16,9 +16,8 @@ DeepVariant supports germline variant-calling in diploid organisms.
* NGS (Illumina or Element) data for either a
[whole genome](docs/deepvariant-case-study.md) or
[whole exome](docs/deepvariant-exome-case-study.md).
* PacBio HiFi data, see the
* PacBio HiFi data
[PacBio case study](docs/deepvariant-pacbio-model-case-study.md).
* PacBio [Iso-Seq/MAS-Seq case study](docs/deepvariant-masseq-case-study.md).
* Oxford Nanopore R10.4.1
[Simplex case study](docs/deepvariant-ont-r104-simplex-case-study.md),
[Duplex case study](docs/deepvariant-ont-r104-duplex-case-study.md).
Expand All @@ -27,7 +26,9 @@ DeepVariant supports germline variant-calling in diploid organisms.
[G400 case study](docs/deepvariant-complete-g400-case-study.md).
* Pangenome-mapping-based case-study:
[vg case study](docs/deepvariant-vg-case-study.md).
* Illumina [RNA-seq Case Study](docs/deepvariant-rnaseq-case-study.md).
* RNA data for
[PacBio Iso-Seq/MAS-Seq case study](docs/deepvariant-masseq-case-study.md)
and [Illumina RNA-seq Case Study](docs/deepvariant-rnaseq-case-study.md).
* Hybrid PacBio HiFi + Illumina WGS, see the
[hybrid case study](docs/deepvariant-hybrid-case-study.md).

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