Fix download of qc data on deploys with local data storage

docs/CHANGELOG.rst

@@ -5,6 +5,15 @@ Change Log
 All notable changes to this project are documented in this file.
 
 
+===================
+21.2.1 - 2024-10-08
+===================
+
+Fixed
+-----
+- Fix fetching ``qc`` data from deploys with local data storage
+
+
 ===================
 21.2.0 - 2024-07-10
 ===================

src/resdk/tables/utils.py

@@ -3,7 +3,7 @@
 import asyncio
 import json
 from io import BytesIO
-from urllib.parse import urljoin
+from urllib.parse import urljoin, urlparse
 
 import aiohttp
 import pandas as pd
@@ -32,16 +32,25 @@ def _uri_to_url(resolwe, uris):
     return json.loads(response.content.decode("utf-8"))
 
 
+def is_absolute(url: str) -> bool:
+    """Return if the given URL absolute."""
+    return bool(urlparse(url).netloc)
+
+
 async def _batch_download(resolwe, uris, parser) -> pd.DataFrame:
     """Download multiple files defined by their uri asynchronously."""
     try:
         uri_to_url = _uri_to_url(resolwe, uris)
     except HTTPError:
         return pd.DataFrame()
 
-    async with aiohttp.ClientSession() as session:
+    def prepare_url(url):
+        """Prepent the base url if it is not absolute."""
+        return url if is_absolute(url) else urljoin(resolwe.url, url)
+
+    async with aiohttp.ClientSession(cookies=resolwe.session.cookies) as session:
         futures = [
-            _download_file(uri, url, session, parser)
+            _download_file(uri, prepare_url(url), session, parser)
             for uri, url in uri_to_url.items()
             if url
         ]

tests/functional/docs/e2e_docs.py

@@ -212,9 +212,8 @@ def setUp(self):
         self.allow_run_process(self.res, "upload-fastq-single")
         self.allow_run_process(self.res, "alignment-star")
         self.allow_run_process(self.res, "workflow-bbduk-star-featurecounts-qc")
-        # Set permissions for using descriptor_schemas:
+        # Set permissions for using descriptor_schema.
         self.allow_use_descriptor_schema(self.res, "reads")
-        self.allow_use_descriptor_schema(self.res, "sample")
 
     def test_tutorial_create(self):
         """Test tutorial-create."""