WIP: debug e2e

docs/files/start.py

@@ -20,6 +20,9 @@
 # All paired-end fastq objects
 res.data.filter(type='data:reads:fastq:paired')
 
+print("All data objects")
+print(res.data.all())
+
 # Get specific object by slug
 reads = res.data.get('resdk-example-reads')
 

tests/functional/docs/e2e_docs.py

@@ -2,6 +2,7 @@
 import shutil
 import sys
 import tempfile
+import time
 from unittest.mock import patch
 
 from resdk import Resolwe
@@ -44,6 +45,7 @@ def tearDown(self):
 
         if hasattr(self, "collection"):
             self.collection.delete(force=True)
+            time.sleep(10)
 
     def run_tutorial_script(self, script_name, replace_lines=None):
         """Run a script from tutorial folder.
@@ -71,13 +73,42 @@ def run_tutorial_script(self, script_name, replace_lines=None):
             exec("".join(content))
 
     def upload_reads(self, res):
+        print("Uploading reads")
+        print("Using res", res)
         reads = res.run(
             slug="upload-fastq-single",
             input={"src": os.path.join(TEST_FILES_DIR, "reads.fastq.gz")},
             collection=self.collection.id,
         )
-        self.set_slug(reads, self.reads_slug)
+
+        print("Uploaded reads")
+        print(reads)
+        print("All data")
+        print(res.data.all())
+        print("All samples")
+        print(res.sample.all())
+
         self.set_slug(reads.sample, self.sample_slug)
+        self.set_slug(reads, self.reads_slug)
+
+        print("After set slug")
+        print(reads)
+        print("All data")
+        print(res.data.all())
+        print("All samples")
+        print(res.sample.all())
+
+        reads.sample.slug = self.sample_slug
+        reads.sample.save()
+        reads.slug = self.reads_slug
+        reads.save()
+        print("After set slug manual")
+        reads.update()
+        print(reads)
+        print("All data")
+        print(res.data.all())
+        print("All samples")
+        print(res.sample.all())
 
         return reads