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adjust memory; comment; for #89
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kltm committed Apr 11, 2022
1 parent 4327e65 commit b6c4d75
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3 changes: 2 additions & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -26,4 +26,5 @@ jobs:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v2

- run: make test-gha
- name: Create data environment
run: make test-gha
4 changes: 3 additions & 1 deletion Makefile
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@@ -1,5 +1,7 @@
OBO = http://purl.obolibrary.org/obo

OWLTOOLS_MEMORY ?= 8G

all: target all_obo neo.obo neo.owl

clean:
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IMPORTS = imports/pr_import.obo
neo.obo: $(OBO_SRCS) $(IMPORTS)
owltools --create-ontology http://purl.obolibrary.org/obo/go/noctua/neo.owl $^ --merge-support-ontologies -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@
owltools -Xms$(OWLTOOLS_MEMORY) -Xmx$(OWLTOOLS_MEMORY) --create-ontology http://purl.obolibrary.org/obo/go/noctua/neo.owl $^ --merge-support-ontologies -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@

## datasets.json is created as a throwaway in the NEO versions of the
## pipeline and is based on the go-site master data.
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