Merge pull request #83 from gdrplatform/GDR-2501

[GDR-2501] Correct typo reponse -> response

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: gDRimport
 Type: Package
 Title: Package for handling the import of dose-response data
-Version: 1.1.9
-Date: 2024-04-08
+Version: 1.1.10
+Date: 2024-05-08
 Authors@R: c(
     person("Arkadiusz", "Gladki", role=c("aut", "cre"), email="[email protected]",
            comment = c(ORCID = "0000-0002-7059-6378")),
@@ -29,7 +29,7 @@ Imports:
     PharmacoGx,
     data.table,
     futile.logger,
-    gDRutils (>= 1.1.5),
+    gDRutils (>= 1.1.12),
     magrittr,
     methods,
     MultiAssayExperiment,
@@ -47,8 +47,8 @@ Imports:
     openxlsx
 Suggests:
     BiocStyle,
-    gDRtestData (>= 1.1.7),
-    gDRstyle (>= 1.1.3),
+    gDRtestData (>= 1.1.10),
+    gDRstyle (>= 1.1.5),
     knitr,
     purrr,
     qs,

NEWS.md

@@ -1,3 +1,6 @@
+## gDRimport 1.1.10 - 2024-05-08
+* fix typo
+
 ## gDRimport 1.1.9 - 2024-04-08
 * change output of `get_exception_data` to data.table
 

R/exceptions.R

@@ -37,7 +37,7 @@ EXCEPTION_TABLE <- tibble::tribble(
   "33", "Error loading input files", "Some input files are missing. Please upload only files with names starting with Manifest_*, Treatment_* and RawData_*", "error", "input files",
   "34", "Missing drug annotation", "The following drugs IDs are missing: '%s'. <br>Don't worry, drug names will be used for them.", "warning", "submit tab",
   "35", "Missing cell line annotation", "The following cell line IDs are missing: '%s'. <br>Don't worry, cell line names will be used for them.", "warning", "submit tab",
-  "36", "Invalid averaged data", "Averaged dose-reponse data for the selected cell line and drug: '%s' can be considered invalid. Please check your data in the module 'Manage Data' or contact gdrplatform team via '[email protected]'.", "error", "assay data"
+  "36", "Invalid averaged data", "Averaged dose-response data for the selected cell line and drug: '%s' can be considered invalid. Please check your data in the module 'Manage Data' or contact gdrplatform team via '[email protected]'.", "error", "assay data"
 )
 #nolint end
 

R/pset_to_gdrDF.R

@@ -132,7 +132,7 @@ getPSet <- function(pset_name,
 #' Get dose and viability readouts and melt into large data table
 #' @keywords internal
 #' 
-#' @return data.table with dose-reponse data
+#' @return data.table with dose-response data
 #' 
 .extractDoseResponse <- function(pset) {
   checkmate::assert_class(pset, "PharmacoSet")

rplatform/dependencies.yaml

@@ -1,18 +1,18 @@
 pkgs:
   gDRutils:
-    ver: '>=1.1.5'
+    ver: '>=1.1.12'
     url: gdrplatform/gDRutils
     ref: main
     subdir: ~
     source: GITHUB
   gDRstyle:
-    ver: '>=1.1.3'
+    ver: '>=1.1.5'
     url: gdrplatform/gDRstyle
     ref: main
     subdir: ~
     source: GITHUB
   gDRtestData:
-    ver: '>=1.1.7'
+    ver: '>=1.1.10'
     url: gdrplatform/gDRtestData
     ref: main
     subdir: ~