deploy: 2ccd6fd

_sources/tutorial/index.rst.txt

@@ -9,6 +9,5 @@ Contents:
    tutorial_trees
    tutorial_phylogeny
    tutorial_smartview
-   tutorial_drawing
+   tutorial_treeview
    tutorial_taxonomy
-

_sources/tutorial/tutorial_drawing.rst.txt → _sources/tutorial/tutorial_treeview.rst.txt

@@ -1,7 +1,7 @@
 .. currentmodule:: ete4.treeview
 
-Programmable tree drawing
-=========================
+Tree drawing (Qt)
+=================
 
 .. contents::
 

index.html

@@ -52,8 +52,8 @@ <h1>Welcome to ETE’s documentation!<a class="headerlink" href="#welcome-to-ete
 <li class="toctree-l1"><a class="reference internal" href="tutorial/index.html">Tutorial</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_trees.html">Working with the Tree structure</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_phylogeny.html">Phylogenetic trees</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_smartview.html">Programmable tree drawing</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_drawing.html">Programmable tree drawing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_smartview.html">Tree drawing and exploration (web)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_treeview.html">Tree drawing (Qt)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial/tutorial_taxonomy.html">Taxonomy databases</a></li>
 </ul>
 </li>

reference/reference_smartview.html

@@ -86,7 +86,7 @@ <h1><a class="toc-backref" href="#id1" role="doc-backlink">Smartview (web graphi
 </dl>
 <dl class="py class">
 <dt class="sig sig-object py" id="ete4.smartview.gui.server.AppTree">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">AppTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tree:</span> <span class="pre">ete4.core.tree.Tree</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name:</span> <span class="pre">str</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">style:</span> <span class="pre">ete4.smartview.renderer.treestyle.TreeStyle</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodestyles:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_props:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exclude_props:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layouts:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timer:</span> <span class="pre">float</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initialized:</span> <span class="pre">bool</span> <span class="pre">=</span> <span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">selected:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active:</span> <span class="pre">&lt;function</span> <span class="pre">namedtuple</span> <span class="pre">at</span> <span class="pre">0x7fb5e1f47e20&gt;</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">searches:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/ete4/smartview/gui/server.html#AppTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#ete4.smartview.gui.server.AppTree" title="Link to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">AppTree</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tree:</span> <span class="pre">ete4.core.tree.Tree</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name:</span> <span class="pre">str</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">style:</span> <span class="pre">ete4.smartview.renderer.treestyle.TreeStyle</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodestyles:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_props:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exclude_props:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layouts:</span> <span class="pre">list</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timer:</span> <span class="pre">float</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initialized:</span> <span class="pre">bool</span> <span class="pre">=</span> <span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">selected:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active:</span> <span class="pre">&lt;function</span> <span class="pre">namedtuple</span> <span class="pre">at</span> <span class="pre">0x7ff960d47e20&gt;</span> <span class="pre">=</span> <span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">searches:</span> <span class="pre">dict</span> <span class="pre">=</span> <span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/ete4/smartview/gui/server.html#AppTree"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#ete4.smartview.gui.server.AppTree" title="Link to this definition">¶</a></dt>
 <dd><dl class="py method">
 <dt class="sig sig-object py" id="ete4.smartview.gui.server.AppTree.__init__">
 <span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tree</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference internal" href="reference_tree.html#ete4.Tree" title="ete4.core.tree.Tree"><span class="pre">Tree</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">str</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">style</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference internal" href="#ete4.smartview.renderer.treestyle.TreeStyle" title="ete4.smartview.renderer.treestyle.TreeStyle"><span class="pre">TreeStyle</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nodestyles</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">dict</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_props</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">list</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exclude_props</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">list</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layouts</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">list</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">timer</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">float</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initialized</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">bool</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">selected</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">dict</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">active</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">namedtuple</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">searches</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">dict</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><span class="pre">None</span></span></span><a class="headerlink" href="#ete4.smartview.gui.server.AppTree.__init__" title="Link to this definition">¶</a></dt>

tutorial/index.html

@@ -69,19 +69,19 @@ <h1>Tutorial<a class="headerlink" href="#tutorial" title="Link to this heading">
 <li class="toctree-l2"><a class="reference internal" href="tutorial_phylogeny.html#working-with-duplicated-gene-families">Working with duplicated gene families</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="tutorial_smartview.html">Programmable tree drawing</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="tutorial_smartview.html">Tree drawing and exploration (web)</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html#overview">Overview</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html#explore-interactive-visualization-of-trees">Explore interactive visualization of trees</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html#customizing-the-aspect-of-trees">Customizing the aspect of trees</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html#combining-styles-faces-and-layouts">Combining styles, faces and layouts</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="tutorial_drawing.html">Programmable tree drawing</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html#overview">Overview</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html#interactive-visualization-of-trees">Interactive visualization of trees</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html#rendering-trees-as-images">Rendering trees as images</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html#customizing-the-aspect-of-trees">Customizing the aspect of trees</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html#combining-styles-faces-and-layouts">Combining styles, faces and layouts</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorial_treeview.html">Tree drawing (Qt)</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html#overview">Overview</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html#interactive-visualization-of-trees">Interactive visualization of trees</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html#rendering-trees-as-images">Rendering trees as images</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html#customizing-the-aspect-of-trees">Customizing the aspect of trees</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html#combining-styles-faces-and-layouts">Combining styles, faces and layouts</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="tutorial_taxonomy.html">Taxonomy databases</a><ul>
@@ -122,8 +122,8 @@ <h3>Navigation</h3>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Tutorial</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_trees.html">Working with the Tree structure</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_phylogeny.html">Phylogenetic trees</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html">Programmable tree drawing</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html">Programmable tree drawing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html">Tree drawing and exploration (web)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html">Tree drawing (Qt)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_taxonomy.html">Taxonomy databases</a></li>
 </ul>
 </li>

tutorial/tutorial_phylogeny.html

@@ -15,7 +15,7 @@
     <link rel="author" title="About these documents" href="../about.html" />
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Programmable tree drawing" href="tutorial_smartview.html" />
+    <link rel="next" title="Tree drawing and exploration (web)" href="tutorial_smartview.html" />
     <link rel="prev" title="Working with the Tree structure" href="tutorial_trees.html" />
 
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
@@ -1021,8 +1021,8 @@ <h3>Navigation</h3>
 <li class="toctree-l1 current"><a class="reference internal" href="index.html">Tutorial</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="tutorial_trees.html">Working with the Tree structure</a></li>
 <li class="toctree-l2 current"><a class="current reference internal" href="#">Phylogenetic trees</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html">Programmable tree drawing</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial_drawing.html">Programmable tree drawing</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_smartview.html">Tree drawing and exploration (web)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorial_treeview.html">Tree drawing (Qt)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="tutorial_taxonomy.html">Taxonomy databases</a></li>
 </ul>
 </li>
@@ -1035,7 +1035,7 @@ <h3>Related Topics</h3>
   <li><a href="../index.html">Documentation overview</a><ul>
   <li><a href="index.html">Tutorial</a><ul>
       <li>Previous: <a href="tutorial_trees.html" title="previous chapter">Working with the Tree structure</a></li>
-      <li>Next: <a href="tutorial_smartview.html" title="next chapter">Programmable tree drawing</a></li>
+      <li>Next: <a href="tutorial_smartview.html" title="next chapter">Tree drawing and exploration (web)</a></li>
   </ul></li>
   </ul></li>
 </ul>