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etetoolkit · Nov 2, 2023 · 7ba0aa2 · 7ba0aa2
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diff --git a/_modules/ete4/gtdb_taxonomy/gtdbquery.html b/_modules/ete4/gtdb_taxonomy/gtdbquery.html
diff --git a/_modules/ete4/ncbi_taxonomy/ncbiquery.html b/_modules/ete4/ncbi_taxonomy/ncbiquery.html
diff --git a/_modules/index.html b/_modules/index.html
@@ -35,6 +35,7 @@ <h1>All modules for which code is available</h1>
 <li><a href="ete4/core/operations.html">ete4.core.operations</a></li>
 <li><a href="ete4/core/seqgroup.html">ete4.core.seqgroup</a></li>
 <li><a href="ete4/core/tree.html">ete4.core.tree</a></li>
+<li><a href="ete4/gtdb_taxonomy/gtdbquery.html">ete4.gtdb_taxonomy.gtdbquery</a></li>
 <li><a href="ete4/ncbi_taxonomy/ncbiquery.html">ete4.ncbi_taxonomy.ncbiquery</a></li>
 <li><a href="ete4/parser/newick.html">ete4.parser.newick</a></li>
 <li><a href="ete4/parser/nexus.html">ete4.parser.nexus</a></li>

diff --git a/_sources/reference/index.rst.txt b/_sources/reference/index.rst.txt
@@ -10,6 +10,6 @@ Reference Guide
    reference_phylo
    reference_clustering
    reference_seqgroup
-   reference_ncbi
+   reference_taxonomy
    reference_smartview
    reference_treeview
diff --git a/_sources/reference/reference_ncbi.rst.txt b/_sources/reference/reference_ncbi.rst.txt
diff --git a/_sources/reference/reference_phylo.rst.txt b/_sources/reference/reference_phylo.rst.txt
@@ -1,12 +1,19 @@
 Phylogenetic trees
 ==================
 
+PhyloTree
+---------
+
 .. autoclass:: ete4.PhyloTree
    :members:
    :undoc-members:
    :show-inheritance:
    :special-members: __init__
 
+
+EvolEvent
+---------
+
 .. autoclass:: ete4.phylo.EvolEvent
    :members:
    :undoc-members:
diff --git a/_sources/reference/reference_taxonomy.rst.txt b/_sources/reference/reference_taxonomy.rst.txt
@@ -0,0 +1,19 @@
+Taxonomy databases
+==================
+
+NCBITaxa
+--------
+
+.. autoclass:: ete4.NCBITaxa
+   :members:
+   :undoc-members:
+   :special-members: __init__
+
+
+GTDBTaxa
+--------
+
+.. autoclass:: ete4.GTDBTaxa
+   :members:
+   :undoc-members:
+   :special-members: __init__
diff --git a/_sources/tutorial/index.rst.txt b/_sources/tutorial/index.rst.txt
@@ -9,3 +9,4 @@ Contents:
    tutorial_trees
    tutorial_phylogeny
    tutorial_drawing
+   tutorial_taxonomy