Add travis and pypi deployment (#3)

.gitignore

@@ -7,3 +7,4 @@ venv
 .pytest_cache
 *.pyc
 .DS_Store
+dist

.travis.yml

@@ -0,0 +1,35 @@
+language: python
+cache: pip
+
+addons:
+    chrome: stable
+
+python:
+  - "3.6"
+
+matrix:
+  fast_finish: true
+
+before_install:
+  - sudo apt-get -qq update
+  - export DISPLAY=:99.0
+  - sh -e /etc/init.d/xvfb start
+
+install:
+  - wget https://chromedriver.storage.googleapis.com/73.0.3683.68/chromedriver_linux64.zip
+  - unzip chromedriver_linux64.zip
+  - export PATH=$PATH:$PWD
+
+script:
+  - pip install .
+  - pip install .[tests]
+  - pycodestyle webviz_subsurface/containers webviz_subsurface/datainput tests
+  - pytest tests
+
+deploy:
+  - provider: pypi
+    user: webviz
+    password:
+      secure: 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
+    on:
+      tags: true

README.md

@@ -1,4 +1,4 @@
-# Webviz Subsurface configuration 
+# Webviz subsurface configuration 
 
 
 ### Introduction
@@ -10,17 +10,19 @@ plugins in [webviz-config](https://github.com/equinor/webviz-config).
 ### Installation
 
 As Dash is using Python3-only functionality, you should create a Python3
-virtual environment before installation. One way of doing this in Equinor is
+virtual environment before installation. One way of doing this is
 ```bash
-export PYTHON_VERSION=3.7.1
-source /prog/sdpsoft/env.sh
-
 PATH_TO_VENV='./my_new_venv'
 python3 -m virtualenv $PATH_TO_VENV
 source $PATH_TO_VENV/bin/activate
 ```
 
-In order to install the utility, run
+The easiest way of installing this package is to run
+```bash
+pip install webviz-subsurface
+```
+
+If you want to install the latest code you can instead run
 ```bash
 git clone [email protected]:Equinor/webviz-subsurface.git
 cd webviz-subsurface
@@ -32,7 +34,8 @@ pip install .
 For general usage, see the documentation on
 [webviz-config](https://github.com/equinor/webviz-config).
 
-Take a look at this configuration example for something subsurface specific.
+Take a look at [this configuration example](./examples/basic_example.yaml)
+for something subsurface specific.
 
 
 ### Creating new elements

pytest.ini

@@ -0,0 +1,3 @@
+[pytest]
+testpaths = tests/
+webdriver = Chrome

setup.py

@@ -1,9 +1,25 @@
 from setuptools import setup, find_packages
 
+with open('README.md', 'r') as fh:
+    long_description = fh.read()
+
+tests_require = [
+    'chromedriver-binary',
+    'dash>=0.38.0',
+    'ipdb',
+    'percy',
+    'selenium',
+    'flake8',
+    'pylint',
+    'pytest-dash>=2.1.1',
+    'mock'
+]
+
 setup(
     name='webviz-subsurface',
-    version='0.1',
     description='Webviz config containers for subsurface data',
+    long_description=long_description,
+    long_description_content_type='text/markdown',
     url='https://github.com/equinor/webviz-subsurface',
     author='R&T Equinor',
     packages=find_packages(exclude=['tests']),
@@ -16,5 +32,15 @@
             'HistoryMatch = webviz_subsurface.containers:HistoryMatch'
         ]
     },
+    install_requires=[
+        'scipy>=1.2.1',
+        'webviz-plotly>=0.0.1',
+        'webviz-subsurface-components>=0.0.2',
+        'webviz-config>=0.0.2'
+    ],
+    tests_require=tests_require,
+    extras_require={'tests': tests_require},
+    setup_requires=['setuptools_scm>=3.2.0'],
+    use_scm_version=True,
     zip_safe=False
 )

tests/data/parameters.csv

@@ -0,0 +1,101 @@
+REAL,param1,param2,param3,param4,param5
+0,-0.875856,-0.407236,-1.94365,-1.73292,-0.526659
+1,-0.470495,0.291171,-0.396227,-4.56093,-0.20937
+2,0.110624,0.444149,-1.00413,-3.7833,-0.690756
+3,0.912676,0.0384368,-1.67812,-1.13615,-0.236384
+4,-0.7349,0.259419,-0.358038,-1.33444,-0.104108
+5,0.750027,0.141387,-1.15614,-0.942754,-1.66625
+6,-0.618177,0.725788,-1.31892,-3.48645,-1.51785
+7,-0.383238,-0.102866,-1.83967,-3.66075,-1.22701
+8,-0.763173,-0.39908,-0.529304,-3.8636,-1.02242
+9,0.436434,-0.528909,-0.897819,-3.50828,-1.96837
+10,-0.947978,-0.47117,-0.712116,-3.85766,-1.82098
+11,-0.0587859,0.271093,-0.49748,-1.0697,-0.28255
+12,0.962515,0.708247,-1.58361,-4.46348,-1.65848
+13,0.912299,0.536269,-1.64083,-2.71689,-0.751055
+14,0.38769,-0.715727,-1.16909,-2.95051,-1.86912
+15,-0.57312,-0.323231,-1.27579,-1.17063,-0.678474
+16,-0.244411,0.577235,-0.798796,-4.27459,-1.61182
+17,0.586486,0.756078,-1.16091,-0.183956,-1.6255
+18,0.313436,-0.377103,-1.55707,-1.79905,-1.17159
+19,-0.337405,-0.1697,-1.81087,-1.48696,-0.856727
+20,0.63199,0.278797,-0.441383,-0.772516,-1.08143
+21,-0.93634,0.28887,-1.52087,-2.03013,-0.661198
+22,-0.621961,0.503005,-1.44524,-0.391462,-1.15773
+23,-0.481156,-0.777296,-0.121033,-4.60376,-1.36652
+24,0.255161,-0.661237,-1.75495,-2.78065,-1.14094
+25,-0.915796,0.164361,-0.482236,-3.7641,-0.0298055
+26,0.788199,-0.0770462,-1.76516,-3.96855,-0.894714
+27,-0.184485,0.0607133,-0.811169,-3.85004,-0.487889
+28,0.135897,0.249731,-0.318907,-0.93984,-0.588588
+29,0.414382,0.111156,-0.921854,-1.38164,-1.77654
+30,-0.532518,0.526784,-0.541737,-4.98728,-1.88406
+31,0.923824,-0.552733,-0.135931,-0.0422384,-0.90053
+32,-0.0801342,-0.0738262,-0.0851388,-0.44625,-1.25627
+33,0.309105,-0.899647,-0.553205,-0.941461,-1.93888
+34,0.883303,-0.577276,-0.26315,-2.22259,-1.04459
+35,-0.788199,-0.564361,-1.18696,-2.37771,-1.92592
+36,-0.798785,-0.729763,-0.541841,-4.03811,-1.78112
+37,-0.240605,-0.911822,-0.464576,-2.94471,-0.269181
+38,0.997391,-0.509785,-1.15155,-0.00164788,-0.632892
+39,0.443709,-0.525793,-0.49534,-1.32166,-0.902483
+40,0.543892,-0.452326,-1.08874,-0.44876,-1.75581
+41,0.90777,0.813169,-1.40148,-3.45953,-0.550609
+42,-0.0494279,0.687413,-0.979871,-3.15002,-1.09412
+43,-0.418402,-0.84238,-0.764285,-1.91601,-0.931801
+44,-0.512313,-0.0380025,-0.404476,-4.9013,-1.06259
+45,0.283486,0.414684,-1.42369,-1.6782,-1.78168
+46,0.29461,-0.604647,-0.923689,-4.73356,-1.36709
+47,-0.0663039,0.463323,-1.65703,-3.25854,-1.77914
+48,-0.391704,-0.607917,-1.12668,-3.66465,-0.0150379
+49,0.990061,0.762999,-0.182279,-1.65236,-0.181911
+50,-0.581204,-0.348323,-0.599561,-2.14749,-0.623294
+51,0.300247,0.468538,-0.677525,-0.960034,-1.06637
+52,0.167333,-0.63414,-0.101815,-1.02794,-1.92073
+53,-0.819369,0.810563,-0.927937,-3.79484,-0.828513
+54,0.788968,-0.756235,-1.72724,-1.37424,-1.35925
+55,-0.861144,-0.596493,-0.530796,-1.07202,-0.403359
+56,-0.394824,0.127789,-1.52484,-3.47559,-0.644352
+57,0.370526,-0.622035,-1.26614,-4.82398,-0.954674
+58,0.214625,0.622978,-0.480739,-4.41922,-0.97834
+59,0.945461,-0.374867,-0.263035,-2.67721,-1.77022
+60,-0.993986,0.331516,-0.982376,-1.33075,-1.75263
+61,-0.911882,0.0382966,-0.156135,-2.13532,-0.94761
+62,0.231348,-0.474135,-1.15367,-4.54257,-1.82315
+63,-0.942791,-0.0680879,-0.392099,-3.10322,-1.66363
+64,0.041372,0.369994,-1.38335,-3.46936,-1.08482
+65,-0.763821,-0.0674544,-1.42241,-1.10404,-1.72444
+66,-0.176977,0.598034,-0.198226,-2.09723,-0.0317826
+67,0.212643,-0.211018,-0.7801,-3.93891,-0.076047
+68,-0.404951,-0.0849538,-0.210486,-2.6621,-0.185013
+69,0.233193,0.711441,-0.137755,-0.720327,-1.63427
+70,0.441375,0.488368,-1.60014,-0.81826,-1.78532
+71,0.307021,-0.113093,-1.79504,-4.32028,-0.528862
+72,0.622704,-0.118087,-0.71593,-0.825902,-0.0794506
+73,-0.811703,-0.184094,-0.619623,-4.38098,-1.99725
+74,0.486881,-0.687405,-0.485178,-2.80762,-0.482481
+75,-0.599717,-0.206133,-0.712509,-3.14518,-1.22203
+76,-0.685642,0.0573893,-1.85431,-4.70566,-0.47863
+77,-0.724203,-0.932711,-1.98806,-4.94827,-0.299622
+78,-0.613565,-0.344292,-0.464429,-0.163956,-1.62096
+79,-0.261722,-0.107082,-1.21124,-1.04311,-0.937077
+80,0.248658,-0.891504,-0.895991,-0.896498,-0.177235
+81,-0.847755,-0.328462,-1.54977,-4.93907,-0.468314
+82,0.784201,0.598249,-0.946083,-1.11915,-1.2591
+83,-0.605287,0.878137,-1.89427,-0.635992,-1.22778
+84,-0.773523,-0.210882,-0.84435,-3.56528,-1.36284
+85,0.541718,0.381457,-1.68663,-1.21574,-1.38599
+86,0.881217,0.407449,-0.954723,-1.3254,-1.35584
+87,0.5227,0.990008,-1.95251,-0.917875,-0.464534
+88,-0.547445,-0.132311,-1.61173,-0.0952772,-1.60458
+89,-0.444519,-0.0146918,-0.977614,-2.88854,-1.95356
+90,-0.13972,-0.454793,-0.808139,-1.6017,-0.1209
+91,-0.114501,0.170237,-1.55051,-3.81532,-1.11993
+92,-0.917638,-0.978958,-0.792755,-0.97681,-1.31486
+93,0.676335,-0.177007,-0.40066,-4.99286,-0.262801
+94,-0.574525,-0.0769377,-0.567106,-1.40762,-0.219847
+95,0.729473,0.193766,-1.41404,-1.44003,-1.22203
+96,-0.639979,0.815374,-1.86193,-1.80513,-1.10395
+97,0.00874448,-0.747198,-1.3857,-0.673076,-1.65204
+98,-0.13628,0.927141,-0.984301,-4.16289,-1.05452
+99,0.746946,0.748492,-0.111114,-0.483965,-0.204353

tests/test_parameter_distribution.py

@@ -0,0 +1,40 @@
+import mock
+import dash
+import pandas as pd
+from pytest_dash.wait_for import wait_for_element_by_css_selector
+from webviz_config.common_cache import cache
+from webviz_subsurface.containers import _parameter_distribution
+
+
+# mocked functions
+get_parameters = 'webviz_subsurface.containers'\
+                '._parameter_distribution.get_parameters'
+
+
+def test_parameter_dist(dash_threaded):
+
+    app = dash.Dash(__name__)
+    app.css.config.serve_locally = True
+    app.scripts.config.serve_locally = True
+    app.config.suppress_callback_exceptions = True
+    cache.init_app(app.server)
+    driver = dash_threaded.driver
+    container_settings = {'scratch_ensembles': {'iter-0': ''}}
+    ensemble = 'iter-0'
+
+    with mock.patch(get_parameters) as mock_parameters:
+        mock_parameters.return_value = pd.read_csv('tests/data/parameters.csv')
+
+        p = _parameter_distribution.\
+            ParameterDistribution(app, container_settings, ensemble)
+
+        app.layout = p.layout
+        dash_threaded(app)
+
+        my_component = wait_for_element_by_css_selector(
+                           driver,
+                           f'#{p.dropdown_vector_id}'
+                       )
+
+        if 'REAL' != my_component.text:
+            raise AssertionError()

webviz_subsurface/__init__.py

@@ -0,0 +1,7 @@
+from pkg_resources import get_distribution, DistributionNotFound
+
+try:
+    __version__ = get_distribution(__name__).version
+except DistributionNotFound:
+    # package is not installed
+    pass

webviz_subsurface/containers/__init__.py

@@ -1,7 +1,8 @@
 '''### _Subsurface specific containers_
 
-These are containers relevant within subsurface workflows. Most of them 
-rely on the setting `scratch_ensemble` configuration within the `container_settings`.
+These are containers relevant within subsurface workflows. Most of them
+rely on the setting `scratch_ensemble` configuration within the
+`container_settings`.
 I.e. you could have
 ```yaml
 title: Reek Webviz Demonstration

webviz_subsurface/containers/_history_match.py

@@ -24,7 +24,7 @@ class HistoryMatch:
 '''
 
     def __init__(self, container_settings, ensembles, observation_file: Path,
-                 title: str='History Match'):
+                 title: str = 'History Match'):
 
         self.observation_file = observation_file
         self.title = title