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emmastrand/README.md

Dr. Emma Strand

Page in progress.

I'm a Postdoctoral Scientist at the Gloucester Marine Genomics Institute. I completed my Ph.D. in Biological and Environmental Sciences with Dr. Hollie Putnam at the University of Rhode Island. My dissertation research investigated the effects of environmental stimuli (e.g., elevated temperature and pCO2) on organismal multivariate physiological and genomic state.

View my CV, Google Scholar page, and other links on my LinkTree here. My open source laboratory notebook from my time at the Putnam Lab can be found here: PhD open lab notebook and my current laboratory notebook from GMGI can be found here: GMGI open lab notebook.

Sustainable Fisheries and Aquaculture

Offshore wind eDNA
Epigenetic aging

Climate Change Resilience

Coral species loss and physiological legacy effects are elicited by extended marine heatwave and projected ocean acidification conditions. Github repository

Polyploidy drives DNA methylation patterns and gene expression variability differences in Pocillopora acuta. Github repository

Epigenetic mechanisms and symbiont communities underlying tolerant and non-tolerant phenotypes in coral. Github repository

Bioinformatic Resources

DNA Methylation analysis workflows: link

Genome functional annotation workflow: link

Gene Expression RNASeq workflow: link

16S Microbial analysis workflows: link

ITS2 Symbiont community analysis workflow: link

Environmental DNA (eDNA) metabarcoding workflows: link

Population Genomics workflows: link

Pinned Loading

  1. EmmaStrand_Notebook EmmaStrand_Notebook Public

    Forked from kevinhwong1/KevinHWong_Notebook

    Open Lab Notebook from University of Rhode Island PhD program

    HTML 5 2

  2. hputnam/Acclim_Dynamics hputnam/Acclim_Dynamics Public

    Holobiont Integration Acclimatization Dynamics

    HTML 2

  3. Ploidy_methylation Ploidy_methylation Public

    Strand et al in prep: P.acuta corals diploid vs. triploid RNAseq, WGBS

    HTML 1