rename kinaseq -> kinase-sim and also start on kebab renaming. will n…

…eed to write a goal script to finish the job..
emer · Dec 18, 2024 · 07742eb · 07742eb
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diff --git a/examples/attn_trn/README.md → examples/attn-trn/README.md b/examples/attn_trn/README.md → examples/attn-trn/README.md
diff --git a/examples/attn_trn/attn.go → examples/attn-trn/attn.go b/examples/attn_trn/attn.go → examples/attn-trn/attn.go
diff --git a/examples/attn_trn/attn_env.go → examples/attn-trn/attn_env.go b/examples/attn_trn/attn_env.go → examples/attn-trn/attn_env.go
diff --git a/...trn_reynolds_heeger_09_small_big_attn.png → ...trn_reynolds_heeger_09_small_big_attn.png b/...trn_reynolds_heeger_09_small_big_attn.png → ...trn_reynolds_heeger_09_small_big_attn.png
diff --git a/.../attn_trn/fig_reynolds_heeger_09_fig2.png → .../attn-trn/fig_reynolds_heeger_09_fig2.png b/.../attn_trn/fig_reynolds_heeger_09_fig2.png → .../attn-trn/fig_reynolds_heeger_09_fig2.png
diff --git a/examples/attn_trn/stims.go → examples/attn-trn/stims.go b/examples/attn_trn/stims.go → examples/attn-trn/stims.go
diff --git a/examples/attn_trn/testtype_string.go → examples/attn-trn/testtype_string.go b/examples/attn_trn/testtype_string.go → examples/attn-trn/testtype_string.go
diff --git a/examples/bench_lvis/Makefile → examples/bench-lvis/Makefile b/examples/bench_lvis/Makefile → examples/bench-lvis/Makefile
diff --git a/examples/bench_lvis/README.md → examples/bench-lvis/README.md b/examples/bench_lvis/README.md → examples/bench-lvis/README.md
diff --git a/examples/bench_lvis/bench_lvis.go → examples/bench-lvis/bench-lvis.go b/examples/bench_lvis/bench_lvis.go → examples/bench-lvis/bench-lvis.go
diff --git a/examples/bench_lvis/bench_lvis_test.go → examples/bench-lvis/bench-lvis_test.go b/examples/bench_lvis/bench_lvis_test.go → examples/bench-lvis/bench-lvis_test.go
diff --git a/examples/bench_lvis/bench_results.md → examples/bench-lvis/bench-results.md b/examples/bench_lvis/bench_results.md → examples/bench-lvis/bench-results.md
diff --git a/examples/bench_lvis/lvis_actual.md → examples/bench-lvis/lvis-actual.md b/examples/bench_lvis/lvis_actual.md → examples/bench-lvis/lvis-actual.md
diff --git a/examples/deep_fsa/README.md → examples/deep-fsa/README.md b/examples/deep_fsa/README.md → examples/deep-fsa/README.md
diff --git a/examples/deep_fsa/config.go → examples/deep-fsa/config.go b/examples/deep_fsa/config.go → examples/deep-fsa/config.go
diff --git a/examples/deep_fsa/deep_fsa.go → examples/deep-fsa/deep-fsa.go b/examples/deep_fsa/deep_fsa.go → examples/deep-fsa/deep-fsa.go
diff --git a/examples/deep_fsa/enumgen.go → examples/deep-fsa/enumgen.go b/examples/deep_fsa/enumgen.go → examples/deep-fsa/enumgen.go
diff --git a/...eep_fsa/fig_deepleabra_fsa_net_3steps.png → ...eep-fsa/fig_deepleabra_fsa_net_3steps.png b/...eep_fsa/fig_deepleabra_fsa_net_3steps.png → ...eep-fsa/fig_deepleabra_fsa_net_3steps.png
diff --git a/examples/deep_fsa/fig_reber_grammar_fsa.png → examples/deep-fsa/fig_reber_grammar_fsa.png b/examples/deep_fsa/fig_reber_grammar_fsa.png → examples/deep-fsa/fig_reber_grammar_fsa.png
diff --git a/examples/deep_fsa/fsa_env.go → examples/deep-fsa/fsa-env.go b/examples/deep_fsa/fsa_env.go → examples/deep-fsa/fsa-env.go
diff --git a/examples/deep_fsa/params.go → examples/deep-fsa/params.go b/examples/deep_fsa/params.go → examples/deep-fsa/params.go
diff --git a/examples/deep_fsa/params_good/config.toml → examples/deep-fsa/params_good/config.toml b/examples/deep_fsa/params_good/config.toml → examples/deep-fsa/params_good/config.toml
diff --git a/examples/deep_fsa/params_good/params.toml → examples/deep-fsa/params_good/params.toml b/examples/deep_fsa/params_good/params.toml → examples/deep-fsa/params_good/params.toml
diff --git a/examples/deep_fsa/params_good/params_all.txt → examples/deep-fsa/params_good/params_all.txt b/examples/deep_fsa/params_good/params_all.txt → examples/deep-fsa/params_good/params_all.txt
diff --git a/...es/deep_fsa/params_good/params_layers.txt → ...es/deep-fsa/params_good/params_layers.txt b/...es/deep_fsa/params_good/params_layers.txt → ...es/deep-fsa/params_good/params_layers.txt
diff --git a/...es/deep_fsa/params_good/params_nondef.txt → ...es/deep-fsa/params_good/params_nondef.txt b/...es/deep_fsa/params_good/params_nondef.txt → ...es/deep-fsa/params_good/params_nondef.txt
diff --git a/...les/deep_fsa/params_good/params_paths.txt → ...les/deep-fsa/params_good/params_paths.txt b/...les/deep_fsa/params_good/params_paths.txt → ...les/deep-fsa/params_good/params_paths.txt
diff --git a/examples/deep_fsa/typegen.go → examples/deep-fsa/typegen.go b/examples/deep_fsa/typegen.go → examples/deep-fsa/typegen.go
diff --git a/examples/deep_move/README.md → examples/deep-move/README.md b/examples/deep_move/README.md → examples/deep-move/README.md
diff --git a/examples/deep_move/config.go → examples/deep-move/config.go b/examples/deep_move/config.go → examples/deep-move/config.go
diff --git a/examples/deep_move/deep_move.go → examples/deep-move/deep-move.go b/examples/deep_move/deep_move.go → examples/deep-move/deep-move.go
diff --git a/examples/deep_move/enumgen.go → examples/deep-move/enumgen.go b/examples/deep_move/enumgen.go → examples/deep-move/enumgen.go
diff --git a/examples/deep_move/grunter_ex.py → examples/deep-move/grunter_ex.py b/examples/deep_move/grunter_ex.py → examples/deep-move/grunter_ex.py
diff --git a/examples/deep_move/move_env.go → examples/deep-move/move-env.go b/examples/deep_move/move_env.go → examples/deep-move/move-env.go
diff --git a/examples/deep_move/params.go → examples/deep-move/params.go b/examples/deep_move/params.go → examples/deep-move/params.go
diff --git a/examples/deep_move/params_good/config.toml → examples/deep-move/params_good/config.toml b/examples/deep_move/params_good/config.toml → examples/deep-move/params_good/config.toml
diff --git a/examples/deep_move/params_good/params.toml → examples/deep-move/params_good/params.toml b/examples/deep_move/params_good/params.toml → examples/deep-move/params_good/params.toml
diff --git a/...ples/deep_move/params_good/params_all.txt → ...ples/deep-move/params_good/params_all.txt b/...ples/deep_move/params_good/params_all.txt → ...ples/deep-move/params_good/params_all.txt
diff --git a/...s/deep_move/params_good/params_layers.txt → ...s/deep-move/params_good/params_layers.txt b/...s/deep_move/params_good/params_layers.txt → ...s/deep-move/params_good/params_layers.txt
diff --git a/...s/deep_move/params_good/params_nondef.txt → ...s/deep-move/params_good/params_nondef.txt b/...s/deep_move/params_good/params_nondef.txt → ...s/deep-move/params_good/params_nondef.txt
diff --git a/...es/deep_move/params_good/params_paths.txt → ...es/deep-move/params_good/params_paths.txt b/...es/deep_move/params_good/params_paths.txt → ...es/deep-move/params_good/params_paths.txt
diff --git a/examples/deep_move/typegen.go → examples/deep-move/typegen.go b/examples/deep_move/typegen.go → examples/deep-move/typegen.go
diff --git a/examples/deep_music/README.md → examples/deep-music/README.md b/examples/deep_music/README.md → examples/deep-music/README.md
diff --git a/examples/deep_music/bach_goldberg.mid → examples/deep-music/bach_goldberg.mid b/examples/deep_music/bach_goldberg.mid → examples/deep-music/bach_goldberg.mid
diff --git a/examples/deep_music/config.go → examples/deep-music/config.go b/examples/deep_music/config.go → examples/deep-music/config.go
diff --git a/examples/deep_music/config_example.toml → examples/deep-music/config_example.toml b/examples/deep_music/config_example.toml → examples/deep-music/config_example.toml
diff --git a/examples/deep_music/configs/30notes.toml → examples/deep-music/configs/30notes.toml b/examples/deep_music/configs/30notes.toml → examples/deep-music/configs/30notes.toml
diff --git a/examples/deep_music/configs/fullsong.toml → examples/deep-music/configs/fullsong.toml b/examples/deep_music/configs/fullsong.toml → examples/deep-music/configs/fullsong.toml
diff --git a/examples/deep_music/deep_music.go → examples/deep-music/deep-music.go b/examples/deep_music/deep_music.go → examples/deep-music/deep-music.go
diff --git a/examples/deep_music/enumgen.go → examples/deep-music/enumgen.go b/examples/deep_music/enumgen.go → examples/deep-music/enumgen.go
diff --git a/examples/deep_music/grunter_ex.py → examples/deep-music/grunter_ex.py b/examples/deep_music/grunter_ex.py → examples/deep-music/grunter_ex.py
diff --git a/examples/deep_music/mac_midi.go → examples/deep-music/mac-midi.go b/examples/deep_music/mac_midi.go → examples/deep-music/mac-midi.go
diff --git a/examples/deep_music/music_env.go → examples/deep-music/music-env.go b/examples/deep_music/music_env.go → examples/deep-music/music-env.go
diff --git a/examples/deep_music/params.go → examples/deep-music/params.go b/examples/deep_music/params.go → examples/deep-music/params.go
diff --git a/examples/deep_music/params_good/config.toml → examples/deep-music/params_good/config.toml b/examples/deep_music/params_good/config.toml → examples/deep-music/params_good/config.toml
diff --git a/examples/deep_music/params_good/params.toml → examples/deep-music/params_good/params.toml b/examples/deep_music/params_good/params.toml → examples/deep-music/params_good/params.toml
diff --git a/...les/deep_music/params_good/params_all.txt → ...les/deep-music/params_good/params_all.txt b/...les/deep_music/params_good/params_all.txt → ...les/deep-music/params_good/params_all.txt
diff --git a/.../deep_music/params_good/params_layers.txt → .../deep-music/params_good/params_layers.txt b/.../deep_music/params_good/params_layers.txt → .../deep-music/params_good/params_layers.txt
diff --git a/.../deep_music/params_good/params_nondef.txt → .../deep-music/params_good/params_nondef.txt b/.../deep_music/params_good/params_nondef.txt → .../deep-music/params_good/params_nondef.txt
diff --git a/...s/deep_music/params_good/params_paths.txt → ...s/deep-music/params_good/params_paths.txt b/...s/deep_music/params_good/params_paths.txt → ...s/deep-music/params_good/params_paths.txt
diff --git a/...sic/results/fig_deep_music_bach_notes.png → ...sic/results/fig_deep_music_bach_notes.png b/...sic/results/fig_deep_music_bach_notes.png → ...sic/results/fig_deep_music_bach_notes.png
diff --git a/...usic/results/fig_deep_music_clustplot.png → ...usic/results/fig_deep_music_clustplot.png b/...usic/results/fig_deep_music_clustplot.png → ...usic/results/fig_deep_music_clustplot.png
diff --git a/...usic/results/fig_deep_music_clustplot.svg → ...usic/results/fig_deep_music_clustplot.svg b/...usic/results/fig_deep_music_clustplot.svg → ...usic/results/fig_deep_music_clustplot.svg
diff --git a/...usic/results/fig_deep_music_clustplot.tsv → ...usic/results/fig_deep_music_clustplot.tsv b/...usic/results/fig_deep_music_clustplot.tsv → ...usic/results/fig_deep_music_clustplot.tsv
diff --git a/..._music/results/fig_deep_music_pcaprjn.png → ...-music/results/fig_deep_music_pcaprjn.png b/..._music/results/fig_deep_music_pcaprjn.png → ...-music/results/fig_deep_music_pcaprjn.png
diff --git a/..._music/results/fig_deep_music_pcaprjn.svg → ...-music/results/fig_deep_music_pcaprjn.svg b/..._music/results/fig_deep_music_pcaprjn.svg → ...-music/results/fig_deep_music_pcaprjn.svg
diff --git a/..._music/results/fig_deep_music_pcaprjn.tsv → ...-music/results/fig_deep_music_pcaprjn.tsv b/..._music/results/fig_deep_music_pcaprjn.tsv → ...-music/results/fig_deep_music_pcaprjn.tsv
diff --git a/...p_music/results/fig_deep_music_raster.png → ...p-music/results/fig_deep_music_raster.png b/...p_music/results/fig_deep_music_raster.png → ...p-music/results/fig_deep_music_raster.png
diff --git a/...ep_music/results/fig_deep_music_simat.png → ...ep-music/results/fig_deep_music_simat.png b/...ep_music/results/fig_deep_music_simat.png → ...ep-music/results/fig_deep_music_simat.png
diff --git a/examples/deep_music/typegen.go → examples/deep-music/typegen.go b/examples/deep_music/typegen.go → examples/deep-music/typegen.go
diff --git a/examples/kinaseq/README.md → examples/kinase-sim/README.md b/examples/kinaseq/README.md → examples/kinase-sim/README.md
diff --git a/examples/kinaseq/config.go → examples/kinase-sim/config.go b/examples/kinaseq/config.go → examples/kinase-sim/config.go
diff --git a/examples/kinaseq/enumgen.go → examples/kinase-sim/enumgen.go b/examples/kinaseq/enumgen.go → examples/kinase-sim/enumgen.go
diff --git a/examples/kinaseq/kinaseq.go → examples/kinase-sim/kinase.go b/examples/kinaseq/kinaseq.go → examples/kinase-sim/kinase.go
diff --git a/.../results/fig_synspk_ltd_trial_50_25hz.png → .../results/fig_synspk_ltd_trial_50_25hz.png b/.../results/fig_synspk_ltd_trial_50_25hz.png → .../results/fig_synspk_ltd_trial_50_25hz.png
diff --git a/.../results/fig_synspk_ltp_trial_25_50hz.png → .../results/fig_synspk_ltp_trial_25_50hz.png b/.../results/fig_synspk_ltp_trial_25_50hz.png → .../results/fig_synspk_ltp_trial_25_50hz.png
diff --git a/..._synspk_trial_dmaxpct5_twin10_25_50hz.csv → ..._synspk_trial_dmaxpct5_twin10_25_50hz.csv b/..._synspk_trial_dmaxpct5_twin10_25_50hz.csv → ..._synspk_trial_dmaxpct5_twin10_25_50hz.csv
diff --git a/..._synspk_trial_dmaxpct5_twin10_25_50hz.png → ..._synspk_trial_dmaxpct5_twin10_25_50hz.png b/..._synspk_trial_dmaxpct5_twin10_25_50hz.png → ..._synspk_trial_dmaxpct5_twin10_25_50hz.png
diff --git a/..._synspk_trial_dmaxpct5_twin10_25_50hz.svg → ..._synspk_trial_dmaxpct5_twin10_25_50hz.svg b/..._synspk_trial_dmaxpct5_twin10_25_50hz.svg → ..._synspk_trial_dmaxpct5_twin10_25_50hz.svg
diff --git a/..._synspk_trial_dmaxpct5_twin10_50_25hz.csv → ..._synspk_trial_dmaxpct5_twin10_50_25hz.csv b/..._synspk_trial_dmaxpct5_twin10_50_25hz.csv → ..._synspk_trial_dmaxpct5_twin10_50_25hz.csv
diff --git a/..._synspk_trial_dmaxpct5_twin10_50_25hz.png → ..._synspk_trial_dmaxpct5_twin10_50_25hz.png b/..._synspk_trial_dmaxpct5_twin10_50_25hz.png → ..._synspk_trial_dmaxpct5_twin10_50_25hz.png
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diff --git a/...sults/fig_synspk_vs_neurspk_100_100hz.png → ...sults/fig_synspk_vs_neurspk_100_100hz.png b/...sults/fig_synspk_vs_neurspk_100_100hz.png → ...sults/fig_synspk_vs_neurspk_100_100hz.png
diff --git a/...esults/fig_synspk_vs_neurspk_100_25hz.png → ...esults/fig_synspk_vs_neurspk_100_25hz.png b/...esults/fig_synspk_vs_neurspk_100_25hz.png → ...esults/fig_synspk_vs_neurspk_100_25hz.png
diff --git a/...results/fig_synspk_vs_neurspk_10_10hz.png → ...results/fig_synspk_vs_neurspk_10_10hz.png b/...results/fig_synspk_vs_neurspk_10_10hz.png → ...results/fig_synspk_vs_neurspk_10_10hz.png
diff --git a/...results/fig_synspk_vs_neurspk_20_10hz.png → ...results/fig_synspk_vs_neurspk_20_10hz.png b/...results/fig_synspk_vs_neurspk_20_10hz.png → ...results/fig_synspk_vs_neurspk_20_10hz.png
diff --git a/...results/fig_synspk_vs_neurspk_20_20hz.png → ...results/fig_synspk_vs_neurspk_20_20hz.png b/...results/fig_synspk_vs_neurspk_20_20hz.png → ...results/fig_synspk_vs_neurspk_20_20hz.png
diff --git a/...spk_vs_neurspk_20_20hz_lrntau10_mtau2.png → ...spk_vs_neurspk_20_20hz_lrntau10_mtau2.png b/...spk_vs_neurspk_20_20hz_lrntau10_mtau2.png → ...spk_vs_neurspk_20_20hz_lrntau10_mtau2.png
diff --git a/...esults/fig_synspk_vs_neurspk_25_100hz.png → ...esults/fig_synspk_vs_neurspk_25_100hz.png b/...esults/fig_synspk_vs_neurspk_25_100hz.png → ...esults/fig_synspk_vs_neurspk_25_100hz.png
diff --git a/...results/fig_synspk_vs_neurspk_25_25hz.png → ...results/fig_synspk_vs_neurspk_25_25hz.png b/...results/fig_synspk_vs_neurspk_25_25hz.png → ...results/fig_synspk_vs_neurspk_25_25hz.png
diff --git a/...results/fig_synspk_vs_neurspk_50_50hz.png → ...results/fig_synspk_vs_neurspk_50_50hz.png b/...results/fig_synspk_vs_neurspk_50_50hz.png → ...results/fig_synspk_vs_neurspk_50_50hz.png
diff --git a/...seq/results/fig_synspk_vs_neurspk_dwt.png → ...sim/results/fig_synspk_vs_neurspk_dwt.png b/...seq/results/fig_synspk_vs_neurspk_dwt.png → ...sim/results/fig_synspk_vs_neurspk_dwt.png
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diff --git a/...seq/results/fig_synspk_vs_neurspk_dwt.tsv → ...sim/results/fig_synspk_vs_neurspk_dwt.tsv b/...seq/results/fig_synspk_vs_neurspk_dwt.tsv → ...sim/results/fig_synspk_vs_neurspk_dwt.tsv
diff --git a/.../results/fig_synspk_vs_neurspk_dwtvar.png → .../results/fig_synspk_vs_neurspk_dwtvar.png b/.../results/fig_synspk_vs_neurspk_dwtvar.png → .../results/fig_synspk_vs_neurspk_dwtvar.png
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diff --git a/...sults/fig_synspk_vs_syncont_100_100hz.png → ...sults/fig_synspk_vs_syncont_100_100hz.png b/...sults/fig_synspk_vs_syncont_100_100hz.png → ...sults/fig_synspk_vs_syncont_100_100hz.png
diff --git a/...results/fig_synspk_vs_syncont_25_25hz.png → ...results/fig_synspk_vs_syncont_25_25hz.png b/...results/fig_synspk_vs_syncont_25_25hz.png → ...results/fig_synspk_vs_syncont_25_25hz.png
diff --git a/...results/fig_synspk_vs_syncont_50_25hz.png → ...results/fig_synspk_vs_syncont_50_25hz.png b/...results/fig_synspk_vs_syncont_50_25hz.png → ...results/fig_synspk_vs_syncont_50_25hz.png
diff --git a/...results/fig_synspk_vs_syncont_50_50hz.png → ...results/fig_synspk_vs_syncont_50_50hz.png b/...results/fig_synspk_vs_syncont_50_50hz.png → ...results/fig_synspk_vs_syncont_50_50hz.png
diff --git a/examples/kinaseq/sim.go → examples/kinase-sim/sim.go b/examples/kinaseq/sim.go → examples/kinase-sim/sim.go
diff --git a/examples/kinaseq/typegen.go → examples/kinase-sim/typegen.go b/examples/kinaseq/typegen.go → examples/kinase-sim/typegen.go
diff --git a/examples/pcore_ds/README.md → examples/pcore-ds/README.md b/examples/pcore_ds/README.md → examples/pcore-ds/README.md
diff --git a/examples/pcore_ds/config.go → examples/pcore-ds/config.go b/examples/pcore_ds/config.go → examples/pcore-ds/config.go
diff --git a/examples/pcore_ds/enumgen.go → examples/pcore-ds/enumgen.go b/examples/pcore_ds/enumgen.go → examples/pcore-ds/enumgen.go
diff --git a/examples/pcore_ds/mseq_env.go → examples/pcore-ds/mseq_env.go b/examples/pcore_ds/mseq_env.go → examples/pcore-ds/mseq_env.go
diff --git a/examples/pcore_ds/params.go → examples/pcore-ds/params.go b/examples/pcore_ds/params.go → examples/pcore-ds/params.go
diff --git a/examples/pcore_ds/params_good/config.toml → examples/pcore-ds/params_good/config.toml b/examples/pcore_ds/params_good/config.toml → examples/pcore-ds/params_good/config.toml
diff --git a/examples/pcore_ds/params_good/params.toml → examples/pcore-ds/params_good/params.toml b/examples/pcore_ds/params_good/params.toml → examples/pcore-ds/params_good/params.toml
diff --git a/examples/pcore_ds/params_good/params_all.txt → examples/pcore-ds/params_good/params_all.txt b/examples/pcore_ds/params_good/params_all.txt → examples/pcore-ds/params_good/params_all.txt
diff --git a/...es/pcore_ds/params_good/params_layers.txt → ...es/pcore-ds/params_good/params_layers.txt b/...es/pcore_ds/params_good/params_layers.txt → ...es/pcore-ds/params_good/params_layers.txt
diff --git a/...es/pcore_ds/params_good/params_nondef.txt → ...es/pcore-ds/params_good/params_nondef.txt b/...es/pcore_ds/params_good/params_nondef.txt → ...es/pcore-ds/params_good/params_nondef.txt
diff --git a/...les/pcore_ds/params_good/params_paths.txt → ...les/pcore-ds/params_good/params_paths.txt b/...les/pcore_ds/params_good/params_paths.txt → ...les/pcore-ds/params_good/params_paths.txt
diff --git a/examples/pcore_ds/paramtweak.go → examples/pcore-ds/paramtweak.go b/examples/pcore_ds/paramtweak.go → examples/pcore-ds/paramtweak.go
diff --git a/examples/pcore_ds/pcore_ds.go → examples/pcore-ds/pcore_ds.go b/examples/pcore_ds/pcore_ds.go → examples/pcore-ds/pcore_ds.go
diff --git a/examples/pcore_ds/pcore_test.go → examples/pcore-ds/pcore_test.go b/examples/pcore_ds/pcore_test.go → examples/pcore-ds/pcore_test.go
diff --git a/...024-02-29-seq3x5pgi_49u_good_Base_epc.tsv → ...024-02-29-seq3x5pgi_49u_good_Base_epc.tsv b/...024-02-29-seq3x5pgi_49u_good_Base_epc.tsv → ...024-02-29-seq3x5pgi_49u_good_Base_epc.tsv
diff --git a/...24-02-29-seq3x5pgi_49u_good_Base_expt.tsv → ...24-02-29-seq3x5pgi_49u_good_Base_expt.tsv b/...24-02-29-seq3x5pgi_49u_good_Base_expt.tsv → ...24-02-29-seq3x5pgi_49u_good_Base_expt.tsv
diff --git a/...024-02-29-seq3x5pgi_49u_good_Base_run.tsv → ...024-02-29-seq3x5pgi_49u_good_Base_run.tsv b/...024-02-29-seq3x5pgi_49u_good_Base_run.tsv → ...024-02-29-seq3x5pgi_49u_good_Base_run.tsv
diff --git a/examples/pcore_ds/typegen.go → examples/pcore-ds/typegen.go b/examples/pcore_ds/typegen.go → examples/pcore-ds/typegen.go
diff --git a/examples/pcore_vs/Makefile → examples/pcore-vs/Makefile b/examples/pcore_vs/Makefile → examples/pcore-vs/Makefile
diff --git a/examples/pcore_vs/README.md → examples/pcore-vs/README.md b/examples/pcore_vs/README.md → examples/pcore-vs/README.md
diff --git a/examples/pcore_vs/config.go → examples/pcore-vs/config.go b/examples/pcore_vs/config.go → examples/pcore-vs/config.go
diff --git a/examples/pcore_vs/gono_env.go → examples/pcore-vs/gono_env.go b/examples/pcore_vs/gono_env.go → examples/pcore-vs/gono_env.go
diff --git a/examples/pcore_vs/params.go → examples/pcore-vs/params.go b/examples/pcore_vs/params.go → examples/pcore-vs/params.go
diff --git a/examples/pcore_vs/params_good/config.toml → examples/pcore-vs/params_good/config.toml b/examples/pcore_vs/params_good/config.toml → examples/pcore-vs/params_good/config.toml
diff --git a/examples/pcore_vs/params_good/params.toml → examples/pcore-vs/params_good/params.toml b/examples/pcore_vs/params_good/params.toml → examples/pcore-vs/params_good/params.toml
diff --git a/examples/pcore_vs/params_good/params_all.txt → examples/pcore-vs/params_good/params_all.txt b/examples/pcore_vs/params_good/params_all.txt → examples/pcore-vs/params_good/params_all.txt
diff --git a/...es/pcore_vs/params_good/params_layers.txt → ...es/pcore-vs/params_good/params_layers.txt b/...es/pcore_vs/params_good/params_layers.txt → ...es/pcore-vs/params_good/params_layers.txt
diff --git a/...es/pcore_vs/params_good/params_nondef.txt → ...es/pcore-vs/params_good/params_nondef.txt b/...es/pcore_vs/params_good/params_nondef.txt → ...es/pcore-vs/params_good/params_nondef.txt
diff --git a/...les/pcore_vs/params_good/params_paths.txt → ...les/pcore-vs/params_good/params_paths.txt b/...les/pcore_vs/params_good/params_paths.txt → ...les/pcore-vs/params_good/params_paths.txt
diff --git a/examples/pcore_vs/paramtweak.go → examples/pcore-vs/paramtweak.go b/examples/pcore_vs/paramtweak.go → examples/pcore-vs/paramtweak.go
diff --git a/examples/pcore_vs/pcore_good.wts.gz → examples/pcore-vs/pcore_good.wts.gz b/examples/pcore_vs/pcore_good.wts.gz → examples/pcore-vs/pcore_good.wts.gz
diff --git a/examples/pcore_vs/pcore_test.go → examples/pcore-vs/pcore_test.go b/examples/pcore_vs/pcore_test.go → examples/pcore-vs/pcore_test.go
diff --git a/examples/pcore_vs/pcore_vs.go → examples/pcore-vs/pcore_vs.go b/examples/pcore_vs/pcore_vs.go → examples/pcore-vs/pcore_vs.go
diff --git a/...ore_vs/results/fig_pcore_test_learned.png → ...ore-vs/results/fig_pcore_test_learned.png b/...ore_vs/results/fig_pcore_test_learned.png → ...ore-vs/results/fig_pcore_test_learned.png
diff --git a/...ore_vs/results/fig_pcore_test_learned.svg → ...ore-vs/results/fig_pcore_test_learned.svg b/...ore_vs/results/fig_pcore_test_learned.svg → ...ore-vs/results/fig_pcore_test_learned.svg
diff --git a/...ore_vs/results/fig_pcore_test_learned.tsv → ...ore-vs/results/fig_pcore_test_learned.tsv b/...ore_vs/results/fig_pcore_test_learned.tsv → ...ore-vs/results/fig_pcore_test_learned.tsv
diff --git a/...core_vs/results/fig_pcore_test_should.png → ...core-vs/results/fig_pcore_test_should.png b/...core_vs/results/fig_pcore_test_should.png → ...core-vs/results/fig_pcore_test_should.png
diff --git a/...ples/pcore_vs/results/fig_pcore_train.png → ...ples/pcore-vs/results/fig_pcore_train.png b/...ples/pcore_vs/results/fig_pcore_train.png → ...ples/pcore-vs/results/fig_pcore_train.png
diff --git a/...ples/pcore_vs/results/fig_pcore_train.svg → ...ples/pcore-vs/results/fig_pcore_train.svg b/...ples/pcore_vs/results/fig_pcore_train.svg → ...ples/pcore-vs/results/fig_pcore_train.svg
diff --git a/...ples/pcore_vs/results/fig_pcore_train.tsv → ...ples/pcore-vs/results/fig_pcore_train.tsv b/...ples/pcore_vs/results/fig_pcore_train.tsv → ...ples/pcore-vs/results/fig_pcore_train.tsv
diff --git a/examples/pcore_vs/typegen.go → examples/pcore-vs/typegen.go b/examples/pcore_vs/typegen.go → examples/pcore-vs/typegen.go