{bio}[GCC/12.3.0] Beast v2.7.7, beagle-lib v4.0.1 w/ CUDA 12.1.1 #22178

lexming · 2025-01-17T15:37:36Z

(created using eb --new-pr)

…7-GCC-12.3.0.eb, beagle-lib-4.0.1-GCC-12.3.0.eb

github-actions · 2025-01-17T15:38:15Z

Updated software `Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb`

Diff against Beast-2.7.7-GCC-12.3.0.eb

easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
index 140ba2418a..2070677b24 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
@@ -2,6 +2,7 @@ easyblock = 'Tarball'
 
 name = 'Beast'
 version = '2.7.7'
+versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://beast2.org'
 description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
@@ -23,8 +24,9 @@ checksums = [{
 }]
 
 dependencies = [
+    ('CUDA', '12.1.1', '', SYSTEM),
     ('Java', '11', '', SYSTEM),
-    ('beagle-lib', '4.0.1'),  # optional but recommended by developers
+    ('beagle-lib', '4.0.1', versionsuffix),  # optional but recommended by developers
     ('GTK3', '3.24.37'),  # optional for GUI tools
 ]

Diff against Beast-2.7.3-GCC-11.3.0.eb

easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
index b2242c074c..2070677b24 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
@@ -1,31 +1,33 @@
 easyblock = 'Tarball'
 
 name = 'Beast'
-version = '2.7.3'
+version = '2.7.7'
+versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://beast2.org'
-description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using 
- strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies 
- but is also a framework for testing evolutionary hypotheses without conditioning on a single 
- tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted 
+description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using
+ strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies
+ but is also a framework for testing evolutionary hypotheses without conditioning on a single
+ tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted
  proportional to its posterior probability. """
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 _archs = {'x86_64': 'x86', 'aarch64': 'aarch64'}
 
 source_urls = ['https://github.com/CompEvol/beast2/releases/download/v%(version)s/']
 sources = ['BEAST.v%%(version)s.Linux.%s.tgz' % _archs[ARCH]]
 checksums = [{
-    'BEAST.v%(version)s.Linux.x86.tgz': '234af8572e827c1c856f0e1ad46e61fa3b3b875c6b5d246f67839ec7c1bf40b5',
-    'BEAST.v%(version)s.Linux.aarch64.tgz': '7353703f178b2f0e440ca31cd93f136a9fe65708cd8a621a8045fc63ca538f22',
+    'BEAST.v2.7.7.Linux.x86.tgz': 'a866f3e5da4ef890a042f01849e32322aa0a8e16e3e1cb2c59f823de2611781a',
+    'BEAST.v2.7.7.Linux.aarch64.tgz': 'aa14e4a950fe2d9f3db24102a4e7365d8d42f79da1d9b1cdcf3016e927d18b9e',
 }]
 
 dependencies = [
+    ('CUDA', '12.1.1', '', SYSTEM),
     ('Java', '11', '', SYSTEM),
-    # this is not mandatory but beagle-lib is recommended by developers
-    ('beagle-lib', '4.0.0'),
+    ('beagle-lib', '4.0.1', versionsuffix),  # optional but recommended by developers
+    ('GTK3', '3.24.37'),  # optional for GUI tools
 ]
 
 sanity_check_paths = {

Diff against Beast-2.6.7-GCC-10.3.0.eb

easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
index 8f2c406f42..2070677b24 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
@@ -1,26 +1,33 @@
 easyblock = 'Tarball'
 
 name = 'Beast'
-version = '2.6.7'
-
-homepage = 'http://beast2.org'
-description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using 
- strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies 
- but is also a framework for testing evolutionary hypotheses without conditioning on a single 
- tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted 
+version = '2.7.7'
+versionsuffix = '-CUDA-%(cudaver)s'
+
+homepage = 'https://beast2.org'
+description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using
+ strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies
+ but is also a framework for testing evolutionary hypotheses without conditioning on a single
+ tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted
  proportional to its posterior probability. """
 
-toolchain = {'name': 'GCC', 'version': '10.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+_archs = {'x86_64': 'x86', 'aarch64': 'aarch64'}
 
 source_urls = ['https://github.com/CompEvol/beast2/releases/download/v%(version)s/']
-sources = ['BEAST.v%(version)s.Linux.tgz']
-checksums = ['05dcc619c2e10163f2c1089ec66149f6e53ec5a0583cd2cb8ffdccbbdb1d8183']
+sources = ['BEAST.v%%(version)s.Linux.%s.tgz' % _archs[ARCH]]
+checksums = [{
+    'BEAST.v2.7.7.Linux.x86.tgz': 'a866f3e5da4ef890a042f01849e32322aa0a8e16e3e1cb2c59f823de2611781a',
+    'BEAST.v2.7.7.Linux.aarch64.tgz': 'aa14e4a950fe2d9f3db24102a4e7365d8d42f79da1d9b1cdcf3016e927d18b9e',
+}]
 
 dependencies = [
+    ('CUDA', '12.1.1', '', SYSTEM),
     ('Java', '11', '', SYSTEM),
-    # this is not mandatory but beagle-lib is recommended by developers
-    ('beagle-lib', '3.1.2'),
+    ('beagle-lib', '4.0.1', versionsuffix),  # optional but recommended by developers
+    ('GTK3', '3.24.37'),  # optional for GUI tools
 ]
 
 sanity_check_paths = {

Updated software `Beast-2.7.7-GCC-12.3.0.eb`

Diff against Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb

easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
index 2070677b24..140ba2418a 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
@@ -2,7 +2,6 @@ easyblock = 'Tarball'
 
 name = 'Beast'
 version = '2.7.7'
-versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://beast2.org'
 description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
@@ -24,9 +23,8 @@ checksums = [{
 }]
 
 dependencies = [
-    ('CUDA', '12.1.1', '', SYSTEM),
     ('Java', '11', '', SYSTEM),
-    ('beagle-lib', '4.0.1', versionsuffix),  # optional but recommended by developers
+    ('beagle-lib', '4.0.1'),  # optional but recommended by developers
     ('GTK3', '3.24.37'),  # optional for GUI tools
 ]

Diff against Beast-2.7.3-GCC-11.3.0.eb

easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
index b2242c074c..140ba2418a 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.7.3-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
@@ -1,31 +1,31 @@
 easyblock = 'Tarball'
 
 name = 'Beast'
-version = '2.7.3'
+version = '2.7.7'
 
 homepage = 'https://beast2.org'
-description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using 
- strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies 
- but is also a framework for testing evolutionary hypotheses without conditioning on a single 
- tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted 
+description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using
+ strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies
+ but is also a framework for testing evolutionary hypotheses without conditioning on a single
+ tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted
  proportional to its posterior probability. """
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 _archs = {'x86_64': 'x86', 'aarch64': 'aarch64'}
 
 source_urls = ['https://github.com/CompEvol/beast2/releases/download/v%(version)s/']
 sources = ['BEAST.v%%(version)s.Linux.%s.tgz' % _archs[ARCH]]
 checksums = [{
-    'BEAST.v%(version)s.Linux.x86.tgz': '234af8572e827c1c856f0e1ad46e61fa3b3b875c6b5d246f67839ec7c1bf40b5',
-    'BEAST.v%(version)s.Linux.aarch64.tgz': '7353703f178b2f0e440ca31cd93f136a9fe65708cd8a621a8045fc63ca538f22',
+    'BEAST.v2.7.7.Linux.x86.tgz': 'a866f3e5da4ef890a042f01849e32322aa0a8e16e3e1cb2c59f823de2611781a',
+    'BEAST.v2.7.7.Linux.aarch64.tgz': 'aa14e4a950fe2d9f3db24102a4e7365d8d42f79da1d9b1cdcf3016e927d18b9e',
 }]
 
 dependencies = [
     ('Java', '11', '', SYSTEM),
-    # this is not mandatory but beagle-lib is recommended by developers
-    ('beagle-lib', '4.0.0'),
+    ('beagle-lib', '4.0.1'),  # optional but recommended by developers
+    ('GTK3', '3.24.37'),  # optional for GUI tools
 ]
 
 sanity_check_paths = {

Diff against Beast-2.6.7-GCC-10.3.0.eb

easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb

diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
index 8f2c406f42..140ba2418a 100644
--- a/easybuild/easyconfigs/b/Beast/Beast-2.6.7-GCC-10.3.0.eb
+++ b/easybuild/easyconfigs/b/Beast/Beast-2.7.7-GCC-12.3.0.eb
@@ -1,26 +1,31 @@
 easyblock = 'Tarball'
 
 name = 'Beast'
-version = '2.6.7'
-
-homepage = 'http://beast2.org'
-description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using 
- strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies 
- but is also a framework for testing evolutionary hypotheses without conditioning on a single 
- tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted 
+version = '2.7.7'
+
+homepage = 'https://beast2.org'
+description = """ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using
+ strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies
+ but is also a framework for testing evolutionary hypotheses without conditioning on a single
+ tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted
  proportional to its posterior probability. """
 
-toolchain = {'name': 'GCC', 'version': '10.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+_archs = {'x86_64': 'x86', 'aarch64': 'aarch64'}
 
 source_urls = ['https://github.com/CompEvol/beast2/releases/download/v%(version)s/']
-sources = ['BEAST.v%(version)s.Linux.tgz']
-checksums = ['05dcc619c2e10163f2c1089ec66149f6e53ec5a0583cd2cb8ffdccbbdb1d8183']
+sources = ['BEAST.v%%(version)s.Linux.%s.tgz' % _archs[ARCH]]
+checksums = [{
+    'BEAST.v2.7.7.Linux.x86.tgz': 'a866f3e5da4ef890a042f01849e32322aa0a8e16e3e1cb2c59f823de2611781a',
+    'BEAST.v2.7.7.Linux.aarch64.tgz': 'aa14e4a950fe2d9f3db24102a4e7365d8d42f79da1d9b1cdcf3016e927d18b9e',
+}]
 
 dependencies = [
     ('Java', '11', '', SYSTEM),
-    # this is not mandatory but beagle-lib is recommended by developers
-    ('beagle-lib', '3.1.2'),
+    ('beagle-lib', '4.0.1'),  # optional but recommended by developers
+    ('GTK3', '3.24.37'),  # optional for GUI tools
 ]
 
 sanity_check_paths = {

Updated software `beagle-lib-4.0.1-GCC-12.3.0.eb`

Diff against beagle-lib-4.0.1-GCC-12.3.0-CUDA-12.1.1.eb

easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0-CUDA-12.1.1.eb

diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0-CUDA-12.1.1.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
index 2c2bbf6705..a0732fa952 100644
--- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0-CUDA-12.1.1.eb
+++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
@@ -2,7 +2,6 @@ easyblock = 'CMakeMake'
 
 name = 'beagle-lib'
 version = '4.0.1'
-versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://github.com/beagle-dev/beagle-lib'
 description = """beagle-lib is a high-performance library that can perform the core calculations at the heart of most
@@ -16,7 +15,6 @@ checksums = ['9d258cd9bedd86d7c28b91587acd1132f4e01d4f095c657ad4dc93bd83d4f120']
 
 dependencies = [
     ('Java', '11', '', SYSTEM),
-    ('CUDA', '12.1.1', '', SYSTEM),
 ]
 
 builddependencies = [
@@ -24,7 +22,7 @@ builddependencies = [
     ('pkgconf', '1.9.5'),
 ]
 
-configopts = '-DBUILD_CUDA=ON '
+configopts = '-DBUILD_CUDA=OFF '
 
 sanity_check_paths = {
     'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % x for x in ["beagle.h", "platform.h"]] +

Diff against beagle-lib-4.0.0-GCC-11.3.0.eb

easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.0-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.0-GCC-11.3.0.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
index 7824fea643..a0732fa952 100644
--- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.0-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
@@ -1,33 +1,33 @@
 easyblock = 'CMakeMake'
 
 name = 'beagle-lib'
-version = '4.0.0'
+version = '4.0.1'
 
 homepage = 'https://github.com/beagle-dev/beagle-lib'
 description = """beagle-lib is a high-performance library that can perform the core calculations at the heart of most
  Bayesian and Maximum Likelihood phylogenetics packages."""
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
-github_account = 'beagle-dev'
-source_urls = [GITHUB_SOURCE]
+source_urls = ['https://github.com/beagle-dev/beagle-lib/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['d197eeb7fe5879dfbae789c459bcc901cb04d52c9cf5ef14fb07ff7a6b74560b']
-
-builddependencies = [
-    ('CMake', '3.24.3'),
-    ('pkgconf', '1.8.0'),
-]
+checksums = ['9d258cd9bedd86d7c28b91587acd1132f4e01d4f095c657ad4dc93bd83d4f120']
 
 dependencies = [
     ('Java', '11', '', SYSTEM),
-    ('pocl', '1.8'),
 ]
 
+builddependencies = [
+    ('CMake', '3.26.3'),
+    ('pkgconf', '1.9.5'),
+]
+
+configopts = '-DBUILD_CUDA=OFF '
+
 sanity_check_paths = {
-    'files': ['include/libhmsbeagle-1/libhmsbeagle/%s' % x for x in ['beagle.h', 'platform.h']] +
-             ['lib/libhmsbeagle%s.%s' % (x, SHLIB_EXT) for x in ['-cpu', '-cpu-sse', '-jni', '']],
-    'dirs': [],
+    'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % x for x in ["beagle.h", "platform.h"]] +
+             ["lib/libhmsbeagle%s.%s" % (x, SHLIB_EXT) for x in ["-cpu", "-cpu-sse", "-jni", ""]],
+    'dirs': []
 }
 
 moduleclass = 'numlib'

Diff against beagle-lib-3.1.2-GCC-10.3.0.eb

easybuild/easyconfigs/b/beagle-lib/beagle-lib-3.1.2-GCC-10.3.0.eb

diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-3.1.2-GCC-10.3.0.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
index dd690af8e5..a0732fa952 100644
--- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-3.1.2-GCC-10.3.0.eb
+++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-4.0.1-GCC-12.3.0.eb
@@ -1,35 +1,33 @@
-easyblock = 'ConfigureMake'
+easyblock = 'CMakeMake'
 
 name = 'beagle-lib'
-version = '3.1.2'
+version = '4.0.1'
 
 homepage = 'https://github.com/beagle-dev/beagle-lib'
 description = """beagle-lib is a high-performance library that can perform the core calculations at the heart of most
  Bayesian and Maximum Likelihood phylogenetics packages."""
 
-toolchain = {'name': 'GCC', 'version': '10.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 source_urls = ['https://github.com/beagle-dev/beagle-lib/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['dd872b484a3a9f0bce369465e60ccf4e4c0cd7bd5ce41499415366019f236275']
-
-builddependencies = [
-    ('Autotools', '20210128'),
-]
+checksums = ['9d258cd9bedd86d7c28b91587acd1132f4e01d4f095c657ad4dc93bd83d4f120']
 
 dependencies = [
     ('Java', '11', '', SYSTEM),
-    ('pkg-config', '0.29.2'),
-    ('pocl', '1.8'),
 ]
 
-preconfigopts = "./autogen.sh && "
-configopts = "--with-opencl=$EBROOTPOCL "
+builddependencies = [
+    ('CMake', '3.26.3'),
+    ('pkgconf', '1.9.5'),
+]
+
+configopts = '-DBUILD_CUDA=OFF '
 
 sanity_check_paths = {
-    'files': ['include/libhmsbeagle-1/libhmsbeagle/%s' % x for x in ['beagle.h', 'platform.h']] +
-             ['lib/libhmsbeagle%s.%s' % (x, SHLIB_EXT) for x in ['-cpu', '-cpu-sse', '-jni', '']],
-    'dirs': [],
+    'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % x for x in ["beagle.h", "platform.h"]] +
+             ["lib/libhmsbeagle%s.%s" % (x, SHLIB_EXT) for x in ["-cpu", "-cpu-sse", "-jni", ""]],
+    'dirs': []
 }
 
 moduleclass = 'numlib'

lexming · 2025-01-20T13:26:53Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-01-20T13:30:08Z

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22178 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22178 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5552

Test results coming soon (I hope)...

- notification for comment with ID 2602426783 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-01-20T13:32:08Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/623f17b055ca18314394465f2e4069bb for a full test report.

verdurin · 2025-01-21T10:00:52Z

Test report by @verdurin
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/543f293ed427f59bfcee0abc7e5becfa for a full test report.

verdurin

Looks fine.

verdurin · 2025-01-21T12:24:51Z

Going in, thanks @lexming!

adding easyconfigs: Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb, Beast-2.7.…

9f2bd74

…7-GCC-12.3.0.eb, beagle-lib-4.0.1-GCC-12.3.0.eb

lexming added the update label Jan 17, 2025

verdurin approved these changes Jan 21, 2025

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verdurin added this to the release after 4.9.4 milestone Jan 21, 2025

verdurin merged commit 54ba239 into easybuilders:develop Jan 21, 2025
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lexming deleted the 20250117163730_new_pr_Beast277 branch January 21, 2025 12:44

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{bio}[GCC/12.3.0] Beast v2.7.7, beagle-lib v4.0.1 w/ CUDA 12.1.1 #22178

{bio}[GCC/12.3.0] Beast v2.7.7, beagle-lib v4.0.1 w/ CUDA 12.1.1 #22178

lexming commented Jan 17, 2025

github-actions bot commented Jan 17, 2025

lexming commented Jan 20, 2025

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verdurin commented Jan 21, 2025

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verdurin commented Jan 21, 2025

{bio}[GCC/12.3.0] Beast v2.7.7, beagle-lib v4.0.1 w/ CUDA 12.1.1 #22178

{bio}[GCC/12.3.0] Beast v2.7.7, beagle-lib v4.0.1 w/ CUDA 12.1.1 #22178

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lexming commented Jan 17, 2025

github-actions bot commented Jan 17, 2025

Updated software Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb

Updated software Beast-2.7.7-GCC-12.3.0.eb

Updated software beagle-lib-4.0.1-GCC-12.3.0.eb

lexming commented Jan 20, 2025

boegelbot commented Jan 20, 2025

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verdurin commented Jan 21, 2025

Updated software `Beast-2.7.7-GCC-12.3.0-CUDA-12.1.1.eb`

Updated software `Beast-2.7.7-GCC-12.3.0.eb`

Updated software `beagle-lib-4.0.1-GCC-12.3.0.eb`