small update #7

pyproject.toml

@@ -9,6 +9,7 @@ authors = [
 ]
 description = ""
 readme = "README.md"
+version = "1.0.0"
 requires-python = ">=3.10"
 #keywords = []
 #license = {}
@@ -39,7 +40,6 @@ dependencies = [
 #    EntrezDirect
 #    DIAMOND
 #    BOFdat
-dynamic = ['version']
 
 [project.scripts]
 specimen = "specimen.cmd_access:cli"

src/specimen/core/generate_draft_model.py

@@ -6,6 +6,7 @@
 ################################################################################
 
 import cobra
+import importlib.metadata
 import numpy as np
 import os.path
 import pandas as pd
@@ -323,6 +324,9 @@ def gen_draft_model(model:cobra.Model, bbh:pd.DataFrame,
 
     # save draft model
     draft.id = name
+    draft.notes['Template model'] = draft.name
+    draft.notes['Description'] = f'This model was created with SPECIMEN version {importlib.metadata.version("specimen")}'
+    draft.name = f'Genome-scale metabolic model {name}'
     cobra.io.write_sbml_model(draft, Path(dir,name+'_draft.xml'))
 
     return draft