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Update README.md
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Made the execution command more readable by splitting the lines using the line break character `\` for command-line shells.
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draeger authored Aug 26, 2019
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17 changes: 16 additions & 1 deletion README.md
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Expand Up @@ -102,7 +102,22 @@ User needs to host the [BiGG](https://github.com/SBRG/bigg_models) Database & [A

Now, you can run the following command in general:
```
java -jar "<path>/ModelPolisher/target/ModelPolisher-2.0.jar" --input=<input> --output=<output> --output-combine=true --annotate-with-bigg=true --bigg-host=<host> --bigg-port=<port> --bigg-dbname=<postgres_dbname> --bigg-user=<postgres_username> --bigg-passwd=<user_password> --add-adb-annotations=true --adb-host=<host> --adb-port=<port> --adb-dbname=<postgres_dbname> --adb-user=<postgres_username> --adb-passwd=<user_password>
java -jar "<path>/ModelPolisher/target/ModelPolisher-2.0.jar" \
--input=<input> \
--output=<output> \
--output-combine=true \
--annotate-with-bigg=true \
--bigg-host=<host> \
--bigg-port=<port> \
--bigg-dbname=<postgres_dbname> \
--bigg-user=<postgres_username> \
--bigg-passwd=<user_password> \
--add-adb-annotations=true \
--adb-host=<host> \
--adb-port=<port> \
--adb-dbname=<postgres_dbname> \
--adb-user=<postgres_username> \
--adb-passwd=<user_password>
```

We understand problems in setting-up database backend and that a developer would need to build ModelPolisher multiple times and making required changes in `java` Dockerfile will be a tedious task.
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