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Add default filters to the test examples
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,8 @@ | ||
| input,sitemap,name,metric,metric_name,condition,condition_name,join_data,structure,included_chains,excluded_chains,tooltip_cols,filter_cols,title | ||
| tests/HIV-Envelope-BF520-DMS/input/1-18_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,1-18,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",1-18 | ||
| tests/HIV-Envelope-BF520-DMS/input/3BNC117_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,3BNC117,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,5V8M,A F G B I J,none,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",3BNC117 | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC508_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC508,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC508 | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC513_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC513,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC513 | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC561_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC561,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC561 | ||
| tests/HIV-Envelope-BF520-DMS/input/IDF033_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDF033,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDF033 | ||
| tests/HIV-Envelope-BF520-DMS/input/PGT151_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,PGT151,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6MAR,A C E B D F,none,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",PGT151 | ||
| input,sitemap,name,metric,metric_name,condition,condition_name,join_data,structure,included_chains,excluded_chains,tooltip_cols,filter_cols,title,filter_limits | ||
| tests/HIV-Envelope-BF520-DMS/input/1-18_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,1-18,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",1-18,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/3BNC117_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,3BNC117,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,5V8M,A F G B I J,none,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",3BNC117,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC508_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC508,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC508,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC513_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC513,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC513,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/IDC561_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDC561,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDC561,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/IDF033_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,IDF033,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6UDJ,C F M G J P,B L R A Q K,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",IDF033,"{'times_seen': [0, 3, 15]}" | ||
| tests/HIV-Envelope-BF520-DMS/input/PGT151_avg.csv,tests/HIV-Envelope-BF520-DMS/sitemap/sitemap.csv,PGT151,escape_mean,Escape,epitope,Epitope,tests/HIV-Envelope-BF520-DMS/join-data/functional_effects.csv,6MAR,A C E B D F,none,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",PGT151,"{'times_seen': [0, 3, 15]}" |
2 changes: 1 addition & 1 deletion
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tests/HIV-Envelope-BF520-DMS/output/HIV-Envelope-BF520-DMS.json
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2 changes: 1 addition & 1 deletion
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tests/SARS2-Mutation-Fitness/output/SARS2-Mutation-Fitness.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,10 @@ | ||
| input,sitemap,name,metric,metric_name,structure,included_chains,excluded_chains,join_data,tooltip_cols,filter_cols,title | ||
| tests/SARS2-Omicron-BA1-DMS/input/268C.59A_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,268C.59A,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",268C.59A | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC25.103_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC25.103,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC25.103 | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC25.43_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC25.43,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC25.43 | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC67.105_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC67.105,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC67.105 | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC9.104_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC9.104,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC9.104 | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC95.102_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC95.102,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC95.102 | ||
| tests/SARS2-Omicron-BA1-DMS/input/LyCoV-1404_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,LyCoV-1404,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",LyCoV-1404 | ||
| tests/SARS2-Omicron-BA1-DMS/input/NTD_5-7_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,NTD_5-7,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",NTD_5-7 | ||
| tests/SARS2-Omicron-BA1-DMS/input/SD1_12-19_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,SD1_12-19,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",SD1_12-19 | ||
| input,sitemap,name,metric,metric_name,structure,included_chains,excluded_chains,join_data,tooltip_cols,filter_cols,title,filter_limits | ||
| tests/SARS2-Omicron-BA1-DMS/input/268C.59A_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,268C.59A,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",268C.59A,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC25.103_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC25.103,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC25.103,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC25.43_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC25.43,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC25.43,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC67.105_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC67.105,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC67.105,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC9.104_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC9.104,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC9.104,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/CC95.102_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,CC95.102,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",CC95.102,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/LyCoV-1404_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,LyCoV-1404,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",LyCoV-1404,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/NTD_5-7_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,NTD_5-7,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",NTD_5-7,"{'times_seen': [0, 3, 15]}" | ||
| tests/SARS2-Omicron-BA1-DMS/input/SD1_12-19_avg.csv,tests/SARS2-Omicron-BA1-DMS/sitemap/sitemap.csv,SD1_12-19,escape_mean,Escape,6xr8,polymer,none,tests/SARS2-Omicron-BA1-DMS/join-data/muteffects_observed.csv,"{'times_seen': '# Obsv', 'effect': 'Func Eff.'}","{'effect': 'Functional Effect', 'times_seen': 'Times Seen'}",SD1_12-19,"{'times_seen': [0, 3, 15]}" |
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