Update manuscript: Generate tables

[zzgeng]

Purpose/implementation Section

What scientific question is your analysis addressing?

Generate tables for OpenPedCan manuscript

What was your approach?

generate and rename:

1. histologies table
2. molecular subtype/MB-SHH subtype
3. software

What GitHub issue does your pull request address?

https://github.com/d3b-center/OpenPedCan-manuscript/issues/108

Directions for reviewers. Tell potential reviewers what kind of feedback you are soliciting.

Which areas should receive a particularly close look?

Is there anything that you want to discuss further?

Is the analysis in a mature enough form that the resulting figure(s) and/or table(s) are ready for review?

Results

What types of results are included (e.g., table, figure)?

What is your summary of the results?

Reproducibility Checklist

• The dependencies required to run the code in this pull request have been added to the project Dockerfile.
• This analysis has been added to continuous integration.

Documentation Checklist

• This analysis module has a README and it is up to date.
• This analysis is recorded in the table in analyses/README.md and the entry is up to date.
• The analytical code is documented and contains comments.

[jharenza]

Suggested change

	# Module author: Aditya Lahiri
	# Module author: Zhuangzhuang Geng

[jharenza]

thanks! changed one colname from Samples to Tumors in S2, and removed the S2-hist table, but otherwise looks good. We can merge for now and update once the MB subtyping is done