rerun indep samples

d3b-center · Jan 27, 2024 · dd6ba40 · dd6ba40
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diff --git a/analyses/independent-samples/00-repeated-samples.nb.html b/analyses/independent-samples/00-repeated-samples.nb.html
diff --git a/analyses/independent-samples/03-qc-independent-samples.nb.html b/analyses/independent-samples/03-qc-independent-samples.nb.html
diff --git a/...yses/independent-samples/results/independent-specimens.methyl.primary-plus.eachcohort.tsv b/...yses/independent-samples/results/independent-specimens.methyl.primary-plus.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.methyl.primary-plus.tsv b/analyses/independent-samples/results/independent-specimens.methyl.primary-plus.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.methyl.primary.eachcohort.tsv b/analyses/independent-samples/results/independent-specimens.methyl.primary.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.methyl.primary.tsv b/analyses/independent-samples/results/independent-specimens.methyl.primary.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.methyl.relapse.eachcohort.tsv b/analyses/independent-samples/results/independent-specimens.methyl.relapse.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.methyl.relapse.tsv b/analyses/independent-samples/results/independent-specimens.methyl.relapse.tsv
diff --git a/...independent-samples/results/independent-specimens.rnaseqpanel.primary-plus.eachcohort.tsv b/...independent-samples/results/independent-specimens.rnaseqpanel.primary-plus.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.rnaseqpanel.primary-plus.tsv b/analyses/independent-samples/results/independent-specimens.rnaseqpanel.primary-plus.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.rnaseqpanel.primary.eachcohort.tsv b/...yses/independent-samples/results/independent-specimens.rnaseqpanel.primary.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.rnaseqpanel.primary.tsv b/analyses/independent-samples/results/independent-specimens.rnaseqpanel.primary.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.rnaseqpanel.relapse.eachcohort.tsv b/...yses/independent-samples/results/independent-specimens.rnaseqpanel.relapse.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.rnaseqpanel.relapse.tsv b/analyses/independent-samples/results/independent-specimens.rnaseqpanel.relapse.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.primary-plus.eachcohort.tsv b/analyses/independent-samples/results/independent-specimens.wgs.primary-plus.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.primary-plus.tsv b/analyses/independent-samples/results/independent-specimens.wgs.primary-plus.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.primary.eachcohort.tsv b/analyses/independent-samples/results/independent-specimens.wgs.primary.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.primary.tsv b/analyses/independent-samples/results/independent-specimens.wgs.primary.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.relapse.eachcohort.tsv b/analyses/independent-samples/results/independent-specimens.wgs.relapse.eachcohort.tsv
diff --git a/analyses/independent-samples/results/independent-specimens.wgs.relapse.tsv b/analyses/independent-samples/results/independent-specimens.wgs.relapse.tsv
diff --git a/...-samples/results/independent-specimens.wgswxspanel.primary-plus.eachcohort.prefer.wgs.tsv b/...-samples/results/independent-specimens.wgswxspanel.primary-plus.eachcohort.prefer.wgs.tsv
diff --git a/...-samples/results/independent-specimens.wgswxspanel.primary-plus.eachcohort.prefer.wxs.tsv b/...-samples/results/independent-specimens.wgswxspanel.primary-plus.eachcohort.prefer.wxs.tsv
diff --git a/...independent-samples/results/independent-specimens.wgswxspanel.primary-plus.prefer.wgs.tsv b/...independent-samples/results/independent-specimens.wgswxspanel.primary-plus.prefer.wgs.tsv
diff --git a/...independent-samples/results/independent-specimens.wgswxspanel.primary-plus.prefer.wxs.tsv b/...independent-samples/results/independent-specimens.wgswxspanel.primary-plus.prefer.wxs.tsv
diff --git a/...ndent-samples/results/independent-specimens.wgswxspanel.primary.eachcohort.prefer.wgs.tsv b/...ndent-samples/results/independent-specimens.wgswxspanel.primary.eachcohort.prefer.wgs.tsv
diff --git a/...ndent-samples/results/independent-specimens.wgswxspanel.primary.eachcohort.prefer.wxs.tsv b/...ndent-samples/results/independent-specimens.wgswxspanel.primary.eachcohort.prefer.wxs.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.wgswxspanel.primary.prefer.wgs.tsv b/...yses/independent-samples/results/independent-specimens.wgswxspanel.primary.prefer.wgs.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.wgswxspanel.primary.prefer.wxs.tsv b/...yses/independent-samples/results/independent-specimens.wgswxspanel.primary.prefer.wxs.tsv
diff --git a/...ndent-samples/results/independent-specimens.wgswxspanel.relapse.eachcohort.prefer.wgs.tsv b/...ndent-samples/results/independent-specimens.wgswxspanel.relapse.eachcohort.prefer.wgs.tsv
diff --git a/...ndent-samples/results/independent-specimens.wgswxspanel.relapse.eachcohort.prefer.wxs.tsv b/...ndent-samples/results/independent-specimens.wgswxspanel.relapse.eachcohort.prefer.wxs.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.wgswxspanel.relapse.prefer.wgs.tsv b/...yses/independent-samples/results/independent-specimens.wgswxspanel.relapse.prefer.wgs.tsv
diff --git a/...yses/independent-samples/results/independent-specimens.wgswxspanel.relapse.prefer.wxs.tsv b/...yses/independent-samples/results/independent-specimens.wgswxspanel.relapse.prefer.wxs.tsv