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Analysis

Update manuscript: Generate tables #626

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Update manuscript: Generate tables

Update manuscript: Generate tables #626

Run time

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Job Run time
Run Analysis - Consensus CN Manta
9m 3s
Run Analysis (Molecular Subtyping - MB, molecular-subtyping-MB/run-molecular-subtyping-mb.sh, 0)
11m 6s
Run Analysis (Molecular Subtyping - CRANIO, molecular-subtyping-CRANIO/run-molecular-subtyping-cr...
17m 31s
Run Analysis (Molecular Subtyping - EPN, molecular-subtyping-EPN/run-molecular-subtyping-EPN.sh)
13m 36s
Run Analysis (Molecular Subtyping - EMBRYONAL, molecular-subtyping-embryonal/run-embryonal-subtyp...
10m 17s
Run Analysis (Molecular Subtyping - CHORDOMA, molecular-subtyping-chordoma/run-molecular-subtypin...
9m 10s
Run Analysis (Molecular Subtyping - EWS, molecular-subtyping-EWS/run_subtyping.sh)
8m 45s
Run Analysis (Molecular Subtyping - NEUROCYTOMA, molecular-subtyping-neurocytoma/run_subtyping.sh)
8m 39s
Run Analysis (Molecular Subtyping - HGG, molecular-subtyping-HGG/run-molecular-subtyping-HGG.sh)
1h 6m 36s
Run Analysis (Molecular Subtyping - LGG, molecular-subtyping-LGAT/run_subtyping.sh, 0)
11m 20s
Run Analysis (Molecular Subtyping - ATRT, molecular-subtyping-ATRT/run-molecular-subtyping-ATRT.sh)
1h 3m 38s
Run Analysis (Molecular Subtyping - PB, molecular-subtyping-PB/run-molecular-subtyping-PB.sh)
11m 17s
Run Analysis (Molecular Subtyping - NBL, molecular-subtyping-NBL/run-molecular-subtyping-NBL.sh)
24m 28s
Run Analysis (Molecular Subtyping - PATHOLOGY/COMPILE, molecular-subtyping-pathology/run-subtypin...
51m 15s
Run Analysis (Molecular Subtyping - INTEGRATE (+ add cancer groups), molecular-subtyping-integrat...
9m 1s
Run Analysis (Independent Specimens, independent-samples/run-independent-samples.sh)
10m 29s
Run Analysis (Independent Specimens pre-release, independent-samples/run-independent-samples.sh, 1)
9m 22s
Run Analysis (Gene set enrichment, gene-set-enrichment-analysis/run-gsea.sh, 1, 1)
10m 38s
Run Analysis (TP53/NF1 scores, tp53_nf1_score/run_classifier.sh, 0)
13m 19s
Run Analysis (Fusion filtering, fusion_filtering/run_fusion_merged.sh)
51m 29s
Run Analysis (Fusion summary, fusion-summary/run-new-analysis.sh, 0)
8m 57s
Run Analysis (Consensus CN Manta, copy_number_consensus_call_manta/run_consensus_call.sh)
9m 6s
Run Analysis (Consensus CN, copy_number_consensus_call/run_consensus_call.sh)
19m 14s
Run Analysis (Consensus CN annotation, focal-cn-file-preparation/run-prepare-cn.sh, 1)
14m 47s
Run Analysis (TMB calculation, tmb-calculation/run_tmb_calculation.sh)
9m 56s
Run Analysis (Mutational signatures, mutational-signatures/run_mutational_signatures.sh, 1)
11m 43s
Run Analysis - Consensus CN
10m 9s
8h 24m 51s