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Create workflow to update yaml file for manuscript #592

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Create workflow to update yaml file for manuscript

Create workflow to update yaml file for manuscript #592

Run time

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Job Run time
Run Analysis - Consensus CN Manta
10m 54s
Run Analysis (Molecular Subtyping - MB, molecular-subtyping-MB/run-molecular-subtyping-mb.sh, 0)
12m 53s
Run Analysis (Molecular Subtyping - CRANIO, molecular-subtyping-CRANIO/run-molecular-subtyping-cr...
16m 34s
Run Analysis (Molecular Subtyping - EPN, molecular-subtyping-EPN/run-molecular-subtyping-EPN.sh)
10m 20s
Run Analysis (Molecular Subtyping - EMBRYONAL, molecular-subtyping-embryonal/run-embryonal-subtyp...
9m 9s
Run Analysis (Molecular Subtyping - CHORDOMA, molecular-subtyping-chordoma/run-molecular-subtypin...
8m 38s
Run Analysis (Molecular Subtyping - EWS, molecular-subtyping-EWS/run_subtyping.sh)
8m 53s
Run Analysis (Molecular Subtyping - NEUROCYTOMA, molecular-subtyping-neurocytoma/run_subtyping.sh)
9m 20s
Run Analysis (Molecular Subtyping - HGG, molecular-subtyping-HGG/run-molecular-subtyping-HGG.sh)
12m 3s
Run Analysis (Molecular Subtyping - LGG, molecular-subtyping-LGAT/run_subtyping.sh, 0)
10m 9s
Run Analysis (Molecular Subtyping - ATRT, molecular-subtyping-ATRT/run-molecular-subtyping-ATRT.sh)
10m 34s
Run Analysis (Molecular Subtyping - PB, molecular-subtyping-PB/run-molecular-subtyping-PB.sh)
8m 35s
Run Analysis (Molecular Subtyping - NBL, molecular-subtyping-NBL/run-molecular-subtyping-NBL.sh)
9m 47s
Run Analysis (Molecular Subtyping - PATHOLOGY/COMPILE, molecular-subtyping-pathology/run-subtypin...
9m 39s
Run Analysis (Molecular Subtyping - INTEGRATE (+ add cancer groups), molecular-subtyping-integrat...
9m 5s
Run Analysis (Independent Specimens, independent-samples/run-independent-samples.sh)
8m 54s
Run Analysis (Independent Specimens pre-release, independent-samples/run-independent-samples.sh, 1)
11m 8s
Run Analysis (Gene set enrichment, gene-set-enrichment-analysis/run-gsea.sh, 1, 1)
9m 16s
Run Analysis (TP53/NF1 scores, tp53_nf1_score/run_classifier.sh, 0)
13m 41s
Run Analysis (Fusion filtering, fusion_filtering/run_fusion_merged.sh)
54m 39s
Run Analysis (Fusion summary, fusion-summary/run-new-analysis.sh, 0)
10m 51s
Run Analysis (Consensus CN Manta, copy_number_consensus_call_manta/run_consensus_call.sh)
9m 9s
Run Analysis (Consensus CN, copy_number_consensus_call/run_consensus_call.sh)
10m 18s
Run Analysis (Consensus CN annotation, focal-cn-file-preparation/run-prepare-cn.sh, 1)
16m 24s
Run Analysis (TMB calculation, tmb-calculation/run_tmb_calculation.sh)
11m 32s
Run Analysis (Mutational signatures, mutational-signatures/run_mutational_signatures.sh, 1)
10m 12s
Run Analysis - Consensus CN
11m 43s
5h 34m 20s