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v14 - rerun TP53, subtyping, independent specimens (1/2) #511

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v14 - rerun TP53, subtyping, independent specimens (1/2)

v14 - rerun TP53, subtyping, independent specimens (1/2) #511

Triggered via pull request January 27, 2024 23:42
@jharenzajharenza
synchronize #542
v13-cmi
Status Failure
Total duration 17m 59s
Artifacts –

run_analysis.yml

on: pull_request
Run Analysis - Consensus CN Manta
10m 20s
Run Analysis - Consensus CN Manta
Matrix: Run Analysis
Run Analysis - Consensus CN
7m 23s
Run Analysis - Consensus CN
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23 warnings
Run Analysis (Molecular Subtyping - PB, molecular-subtyping-PB/run-molecular-subtyping-PB.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - EWS, molecular-subtyping-EWS/run_subtyping.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (TMB calculation, tmb-calculation/run_tmb_calculation.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - EMBRYONAL, molecular-subtyping-embryonal/run-embryonal-subtyp...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - PATHOLOGY/COMPILE, molecular-subtyping-pathology/run-subtypin...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - INTEGRATE (+ add cancer groups), molecular-subtyping-integrat...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Fusion summary, fusion-summary/run-new-analysis.sh, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - ATRT, molecular-subtyping-ATRT/run-molecular-subtyping-ATRT.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - CHORDOMA, molecular-subtyping-chordoma/run-molecular-subtypin...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Fusion filtering, fusion_filtering/run_fusion_merged.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Independent Specimens pre-release, independent-samples/run-independent-samples.sh, 1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - HGG, molecular-subtyping-HGG/run-molecular-subtyping-HGG.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - NEUROCYTOMA, molecular-subtyping-neurocytoma/run_subtyping.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Independent Specimens, independent-samples/run-independent-samples.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - NBL, molecular-subtyping-NBL/run-molecular-subtyping-NBL.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - LGG, molecular-subtyping-LGAT/run_subtyping.sh, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (TP53/NF1 scores, tp53_nf1_score/run_classifier.sh, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - EPN, molecular-subtyping-EPN/run-molecular-subtyping-EPN.sh)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - MB, molecular-subtyping-MB/run-molecular-subtyping-mb.sh, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis - Consensus CN Manta
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Molecular Subtyping - CRANIO, molecular-subtyping-CRANIO/run-molecular-subtyping-cr...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis (Consensus CN annotation, focal-cn-file-preparation/run-prepare-cn.sh, 1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run Analysis - Consensus CN
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.