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Analysis

Analysis update: Add methylation in LGAT workflow #491

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Analysis update: Add methylation in LGAT workflow

Analysis update: Add methylation in LGAT workflow #491

Run time

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Job Run time
Run Analysis - Consensus CN Manta
6m 21s
Run Analysis (Molecular Subtyping - MB, molecular-subtyping-MB/run-molecular-subtyping-mb.sh, 0)
8m 18s
Run Analysis (Molecular Subtyping - CRANIO, molecular-subtyping-CRANIO/run-molecular-subtyping-cr...
10m 24s
Run Analysis (Molecular Subtyping - EPN, molecular-subtyping-EPN/run-molecular-subtyping-EPN.sh)
7m 43s
Run Analysis (Molecular Subtyping - EMBRYONAL, molecular-subtyping-embryonal/run-embryonal-subtyp...
6m 16s
Run Analysis (Molecular Subtyping - CHORDOMA, molecular-subtyping-chordoma/run-molecular-subtypin...
6m 4s
Run Analysis (Molecular Subtyping - EWS, molecular-subtyping-EWS/run_subtyping.sh)
5m 55s
Run Analysis (Molecular Subtyping - NEUROCYTOMA, molecular-subtyping-neurocytoma/run_subtyping.sh)
16m 19s
Run Analysis (Molecular Subtyping - HGG, molecular-subtyping-HGG/run-molecular-subtyping-HGG.sh)
8m 23s
Run Analysis (Molecular Subtyping - LGG, molecular-subtyping-LGAT/run_subtyping.sh, 0)
6m 38s
Run Analysis (Molecular Subtyping - ATRT, molecular-subtyping-ATRT/run-molecular-subtyping-ATRT.sh)
6m 8s
Run Analysis (Molecular Subtyping - PB, molecular-subtyping-PB/run-molecular-subtyping-PB.sh)
5m 52s
Run Analysis (Molecular Subtyping - NBL, molecular-subtyping-NBL/run-molecular-subtyping-NBL.sh)
8m 29s
Run Analysis (Molecular Subtyping - PATHOLOGY/COMPILE, molecular-subtyping-pathology/run-subtypin...
6m 17s
Run Analysis (Molecular Subtyping - INTEGRATE (+ add cancer groups), molecular-subtyping-integrat...
5m 58s
Run Analysis (Independent Specimens, independent-samples/run-independent-samples.sh)
6m 22s
Run Analysis (Independent Specimens pre-release, independent-samples/run-independent-samples.sh, 1)
6m 19s
Run Analysis (TP53/NF1 scores, tp53_nf1_score/run_classifier.sh, 0)
9m 10s
Run Analysis (Fusion filtering, fusion_filtering/run_fusion_merged.sh)
6m 13s
Run Analysis (Fusion summary, fusion-summary/run-new-analysis.sh, 0)
6m 3s
Run Analysis (Consensus CN annotation, focal-cn-file-preparation/run-prepare-cn.sh, 1)
12m 25s
Run Analysis (TMB calculation, tmb-calculation/run_tmb_calculation.sh)
8m 46s
Run Analysis - Consensus CN
7m 24s
2h 57m 47s