MAINT: refactor homology installation #341
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| name: CI | |
| on: | |
| push: | |
| branches-ignore: | |
| - master | |
| pull_request: | |
| branches-ignore: | |
| - master | |
| jobs: | |
| ci-not-internet: | |
| name: "Python ${{ matrix.python-version }} (${{ matrix.os }})" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: "actions/checkout@v4" | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up cache | |
| id: cache-data | |
| uses: actions/cache@v3 | |
| with: | |
| path: tests/data | |
| key: ${{ runner.os }}-data-v1-${{ hashFiles('tests/data/small-113.zip') }} | |
| restore-keys: | | |
| ${{ runner.os }}-data-v1- | |
| - name: Check cache status | |
| run: | | |
| echo "Cache hit: ${{ steps.cache-data.outputs.cache-hit }} ***" | |
| - name: Download data file | |
| if: steps.cache-data.outputs.cache-hit != 'true' | |
| run: | | |
| curl -o tests/data/small-113.zip https://zenodo.org/records/14625203/files/small-113.zip | |
| - name: Unzip data file | |
| run: | | |
| cd tests/data | |
| unzip -o -q small-113.zip | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| - name: "Installs for ${{ matrix.python-version }}" | |
| run: | | |
| uv venv venv -p python${{ matrix.python-version }} | |
| uv tool install -p venv nox | |
| - name: "Run nox for ${{ matrix.python-version }}" | |
| run: | | |
| nox -db uv -s test-${{ matrix.python-version }} -- -m 'not internet' --cov-report lcov:lcov-${{matrix.os}}-${{matrix.python-version}}.lcov --cov-report term --cov-append --cov ensembl_tui | |
| - name: Coveralls Parallel | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| parallel: true | |
| github-token: ${{ secrets.github_token }} | |
| flag-name: run-${{matrix.python-version}}-${{matrix.os}} | |
| file: "tests/lcov-${{matrix.os}}-${{matrix.python-version}}.lcov" | |
| ci-internet: | |
| name: "Python ${{ matrix.python-version }} (${{ matrix.os }})" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: "actions/checkout@v4" | |
| with: | |
| fetch-depth: 0 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| - name: "Installs for ${{ matrix.python-version }}" | |
| run: | | |
| uv venv venv -p python${{ matrix.python-version }} | |
| uv tool install -p venv nox | |
| - name: "Run nox for ${{ matrix.python-version }}" | |
| run: | | |
| nox -db uv -s test-${{ matrix.python-version }} -- -m 'internet' --cov-report lcov:lcov-${{matrix.os}}-${{matrix.python-version}}-internet.lcov --cov-report term --cov-append --cov ensembl_tui | |
| - name: Coveralls Parallel | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| parallel: true | |
| github-token: ${{ secrets.github_token }} | |
| flag-name: run-${{matrix.python-version}}-${{matrix.os}} | |
| file: "tests/lcov-${{matrix.os}}-${{matrix.python-version}}-internet.lcov" | |
| finish: | |
| name: "Finish Coveralls" | |
| needs: [ci-not-internet, ci-internet] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.github_token }} | |
| parallel-finished: true |