Preparations for Python 3.10

cnapy/appdata.py

@@ -188,13 +188,13 @@ def compute_color_heat(self, value: Tuple[float, float], low, high):
             if high == 0.0:
                 h = 255
             else:
-                h = mean * 255 / high
+                h = round(mean * 255 / high)
             return QColor.fromRgbF(255-h, 255, 255 - h)
         else:
             if low == 0.0:
                 h = 255
             else:
-                h = mean * 255 / low
+                h = round(mean * 255 / low)
             return QColor.fromRgbF(255, 255 - h, 255 - h)
 
     def low_and_high(self) -> Tuple[int, int]:

cnapy/gui_elements/annotation_widget.py

@@ -41,7 +41,7 @@ def __init__(self, parent):
         self.delete_anno = QPushButton("-")
         self.delete_anno.clicked.connect(self.delete_anno_row)
         lh3.addWidget(self.delete_anno)
-        self.open_annotation = QPushButton("Open (first)\nin browser")
+        self.open_annotation = QPushButton("Open chosen\nin browser")
         self.open_annotation.clicked.connect(self.open_in_browser)
         lh3.addWidget(self.open_annotation)
         lh2.addItem(lh3)

cnapy/gui_elements/central_widget.py

@@ -170,7 +170,7 @@ def fit_mapview(self):
 
     def show_bottom_of_console(self):
         (_, r) = self.splitter2.getRange(1)
-        self.splitter2.moveSplitter(r*0.5, 1)
+        self.splitter2.moveSplitter(r//2, 1)
 
         vSB = self.console.children()[2].verticalScrollBar()
         max_scroll = vSB.maximum()

cnapy/gui_elements/configuration_cplex.py

@@ -161,7 +161,7 @@ def run_python_connection_script(self):
                 self.get_and_set_environmental_variable()
 
     def get_and_set_environmental_variable(self):
-        base_path = self.cplex_directory.text() + "cplex/python/3.8/"
+        base_path = self.cplex_directory.text() + "cplex/python/3.10/"
 
         folders_list = [
             base_path+folder for folder in os.listdir(base_path) if os.path.isdir(base_path+folder)

cnapy/gui_elements/map_view.py

@@ -426,7 +426,7 @@ def __init__(self, parent: MapView, r_id: str, name):
         self.item.setTextMargins(1, -13, 0, -10)  # l t r b
         font = self.item.font()
         point_size = font.pointSize()
-        font.setPointSize(point_size+13)
+        font.setPointSizeF(point_size+13.0)
         self.item.setFont(font)
         self.item.setAttribute(Qt.WA_TranslucentBackground)
 

environment.yml

@@ -11,20 +11,21 @@ dependencies:
   - autopep8=2.0
   - pydantic=1.10
   - matplotlib-base=3.6
-  - pip=22
-  - python=3.8
+  - pip=23
+  - python=3.10
   - qtpy=2.3
   - pyqtwebengine=5.15
   - appdirs=1.4
-  - cobra>=0.26.3
+  - cobra>=0.29
   - qtconsole=5.4
   - requests=2.28
   - psutil=5.9
   - efmtool_link=0.0.4
   - optlang_enumerator>=0.0.9
-  - straindesign>=1.9
+  - straindesign>=1.11
   - nest-asyncio
   - gurobi
   - cplex
   - numpy=1.23
-  - openpyxl
+  - scipy=1.12 # Starting from 1.13, we get StrainDesign errors :-/
+  - openpyxl