Fix pkgdown build on GitHub Actions for new Ubuntu 24.04 runners #148
Workflow file for this run
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| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [main, master] | |
| push: | |
| branches: [main, master] | |
| name: pkgdown | |
| jobs: | |
| build-pkgdown-site: | |
| runs-on: ubuntu-latest | |
| # Required for OIDC access to S3 | |
| permissions: | |
| id-token: write | |
| contents: read | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Setup R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Prepare PTAXSIM database | |
| id: prep_ptaxsim_db | |
| uses: ./.github/actions/prepare-ptaxsim | |
| with: | |
| ASSUMED_ROLE: ${{ secrets.AWS_IAM_ROLE_TO_ASSUME_ARN }} | |
| - name: Set PTAXSIM database path | |
| run: echo "PTAXSIM_DB_PATH=${{ steps.prep_ptaxsim_db.outputs.PTAXSIM_DB_DIR }}/ptaxsim.db" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Build pkgdown site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Setup node | |
| uses: actions/setup-node@v4 | |
| - name: Install docs build dependencies | |
| run: npm install -g @mermaid-js/mermaid-cli | |
| - name: Prepare Mermaid assets for docs | |
| run: | | |
| for file in inst/mermaid/*.mmd; do | |
| # Confine the mermaid process to an AppArmor profile, necessary on | |
| # Ubuntu >= 23.10 to work around new AppArmor rules that block the | |
| # Puppeteer sandbox (used by mermaid) from working. See: | |
| # https://github.com/mermaid-js/mermaid-cli/issues/730#issuecomment-2408615110 | |
| aa-exec --profile=chrome mmdc -i "$file" -o "${file/.mmd/.svg}" | |
| done | |
| mkdir -p docs/mermaid | |
| mv inst/mermaid/*.svg docs/mermaid | |
| working-directory: ${{ env.PROJECT_DIR }} | |
| shell: bash | |
| - name: Configure pages | |
| uses: actions/configure-pages@v3 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: 'docs' | |
| deploy: | |
| if: contains(fromJSON('["main", "master"]'), github.ref_name) && github.event_name != 'pull_request' | |
| needs: build-pkgdown-site | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| permissions: | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |