Merge branch 'hotfix/1.5.4'

cancerit · Aug 7, 2020 · ae95a92 · ae95a92
2 parents 3eb9295 + 33c9300
commit ae95a92
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -122,8 +122,7 @@ in the base of the clone:
 
 ```bash
 cd $PROJECTROOT
-hash virtualenv || pip3 install virtualenv
-virtualenv -p python3 env
+python3 -m venv env
 source env/bin/activate
 pip install -r requirements.txt
 python setup.py develop # so bin scripts can find module

diff --git a/cgp_seq_input_val/seq_validator.py b/cgp_seq_input_val/seq_validator.py
@@ -20,7 +20,7 @@
 Q_RANGES = {'Sanger': [33, 73],
             'Solexa': [59, 104],
             'Illumina 1.3': [64, 104],
-            'Illumina 1.5': [67, 105],
+            'Illumina 1.5': [66, 105],  # 2=Read Segment Quality Control Indicator
             'Illumina 1.8': [33, 74]}
 
 PROG_RECORDS = 100000

diff --git a/setup.py b/setup.py
@@ -9,7 +9,7 @@
     'url': 'https://github.com/cancerit/cgp_seq_input_val',
     'download_url': '',
     'author_email': '[email protected]',
-    'version': '1.5.3',
+    'version': '1.5.4',
     'python_requires': '>= 3.6',
     'setup_requires': ['pytest'],
     'install_requires': ['progressbar2', 'xlrd', 'xopen'],