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@tomkinsc tomkinsc released this 06 Mar 19:37
· 39 commits to master since this release
v2.3.0
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Learn about vigilant mode.
  • This adds a new CLI function, read_utils.py::filter_bam_to_proper_primary_mapped_reads() to remove from a bam file any reads not flagged as being properly paired. This same functionality is also now available as an optional post-alignment operation of minimap2_idxstats and bwamem_idxstats if --filterReadsAfterAlignment is specified.
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