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DEGA-106-Segmentation-Metrics#36

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cornhundred wants to merge 25 commits intomainbroadinstitute/celldega:mainfrom DEGA-106-Segmentation-Metricsbroadinstitute/celldega:DEGA-106-Segmentation-MetricsCopy head branch name to clipboard

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Commits on Nov 20, 2024

• setting up boiler plate

  

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• metrics addition + pre-process nb corrections

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• remove comments

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• column name fix

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• clean up

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• added extra metrics info as comments

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• included gene specific metrics

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• remove image intensity calc, clean up segmentation_qc.ipynb

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• qc module name update

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Commits on Nov 22, 2024

• xenium-default support, remove cells per um2 metric, concise metric names

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Commits on Nov 26, 2024

• output address fix, notebook changes

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• working on custom segmentation

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• Merge branch 'main' into DEGA-106-Segmentation-Metrics

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Commits on Dec 19, 2024

• disjoint marker script addition in qc

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• segmentation_qc notebook clean up

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Commits on Jan 3, 2025

• more qc functions for default xenium results

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• pulling changes from main to segmentation metrics branch

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Commits on Jan 15, 2025

• update branch with main

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Commits on Jan 16, 2025

• remove redundant functions

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• notebook check run

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• update with main

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Commits on Jan 17, 2025

• remove algorithm specific, cell type specific lines

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Commits on Jan 23, 2025

• changes after review

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• notebook changes

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Commits on Jan 24, 2025

• more review changes

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