CoMiDA v1.0.0
The content of this release matches the algorithm described in "An algorithm for designing minimal microbial communities with desired metabolic capacities" (Eng and Borenstein, under review).
Functionality
- Allows users to identify minimal microbial communities that provide a targeted metabolic capacity.
- Includes designation of species weighting and forced substrate usage.
- Provides tools for aiding users in defining compartmentalized species problems and extracting solutions from the suggested ILP solver output.