Add JAK-STAT pathway to Example models

docs/models.rst

@@ -119,6 +119,20 @@ TGF-β/SMAD pathway
 * **Code:** `tgfb_smad`_
 * **Paper:** :cite:p:`LUCARELLI201875`
 
+
+JAK-STAT pathway
+-------------------
+
+.. raw:: html
+
+    <p align="left">
+        <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/biomass/models/jak_stat_pathway/jak_stat_pathway.png"
+            width="400px" alt="JAK-STAT pathway">
+    </p>
+
+* **Code:** `jak_stat_pathway`_
+* **Paper:** :cite:p:`raia2011Dynamic`
+
 .. _circadian_clock: https://github.com/biomass-dev/biomass/tree/master/biomass/models/circadian_clock
 .. _g1s_transition: https://github.com/biomass-dev/biomass/tree/master/biomass/models/g1s_transition
 .. _Nakakuki_Cell_2010: https://github.com/biomass-dev/biomass/tree/master/biomass/models/Nakakuki_Cell_2010
@@ -128,4 +142,4 @@ TGF-β/SMAD pathway
 .. _pan_rtk: https://github.com/biomass-dev/biomass/tree/master/biomass/models/pan_rtk
 .. _prolif_quies: https://github.com/biomass-dev/biomass/tree/master/biomass/models/prolif_quies
 .. _tgfb_smad: https://github.com/biomass-dev/biomass/tree/master/biomass/models/tgfb_smad
-
+.. _jak_stat_pathway: https://github.com/biomass-dev/biomass/tree/master/biomass/models/jak_stat_pathway

docs/references.bib

@@ -168,4 +168,17 @@ @article{maiwald2008dynamical
   year      = {2008},
   publisher = {Oxford University Press},
   doi       = {10.1093/bioinformatics/btn350}
-}
+}
+
+@article{raia2011Dynamic,
+  author  = {Raia, Valentina and Schilling, Marcel and B{\"o}hm, Martin and Hahn, Bettina and Kowarsch, Andreas and Raue, Andreas and Sticht, Carsten and Bohl, Sebastian and Saile, Maria and M{\"o}ller, Peter and Gretz, Norbert and Timmer, Jens and Theis, Fabian and Lehmann, Wolf-Dieter and Lichter, Peter and Klingm{\"u}ller, Ursula},
+  journal = {Cancer Research},
+  number  = {3},
+  pages   = {693--704},
+  title   = {Dynamic {{Mathematical Modeling}} of {{IL13-Induced Signaling}} in {{Hodgkin}} and {{Primary Mediastinal B-Cell Lymphoma Allows Prediction}} of {{Therapeutic Targets}}},
+  volume  = {71},
+  year    = {2011},
+  issn    = {0008-5472},
+  doi     = {10.1158/0008-5472.CAN-10-2987},
+  url     = {https://aacrjournals.org/cancerres/article/71/3/693/571520}
+}